Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc91648g00002 ATGGCTTCTTCTGTGATCCGTTTCTTCAAGATTGTTCTCACTAAAAGCCTTCAAGATGGAACTCTTAAGGTACCAAAGAAGTTTTGTAAGAAATATGGTGATGGTTTGCCAAATCCAGTGTATCTGAAGCCTCCAGATGGTACCAAATGGAAAATAGATTGGACTAAGAAAGATGGCGAAATTCTATTTGAAAAGGGTTGGAAAGAGCTTGCAACATATTACTCTCTGGATAATGGCCATTTGTTGTGGTTTGAGTATAATGGAACTTCCGAAATCGAAGTACACATATTTGACATGAGTGGCCTAGAAATAGACTATCCTTCCGATGACCACATCAGCTGTGACAACTCGGTTGGGATCTTGAACGAACGGTCATGGAAGAGGAAAGAAGTAAAAGCAGAACCAGAGTCATCATCTCCTTACAGAAGTAAAAGATTGAAAAGAACTGTCAAAACTAGAGATGTGGAAAGCAGCCCCAATAAACAAAACCGGAAGCAGCATGTGAATAATGAAGAAGATAGCCAATCCGAAGAGACACAACATAAGAAGCCAATAAGTCGATGTAAAACACGATATGTGGATGATTTCTATCCTGGGACGAGTGGGTTTCAAGCTCTAAATGAAGCACAGAGATTCAACTCAAGAAATCCCTTTTTCATAGTCAAGATAAGGCAAGCCAATGTGTCAAGATCAAAAGTTAATTTCGACGCTTCCTTTTTCAGAAAATATTGTAATAAGGAGCAGAATGTACAGATAAGGTTTCAGGGAAAGTTGTTGCCTGCAAAGATGCAATGTTATCCATATCTCTCTCAAGCCGTTATCTCTTCCGGTTGGGGCCTTTTTGCTCGAGAAAGTAAATTACAAGCTGGGGATGTTATTGTTTTTGAGCTCATCAAAAGAGATGTTCCAACATTTGACGTTCATATTTATAGAGCCCAAGCTTTCGAGCCTGGGGCCCGTGGGCTTCAGTATCCGATAGAGACTTGGCAATTCAGATGTCCAAAAGAATTTAAGAACTTCGAGTCAGAAAATCCCTCTTTTATAATCAAGATAACGCGAAAAGGTCTATTGAGAGCAAGAGCTGGCATACCACGTGTCTTCTTCAAGAAGTATTTTGAAAAGGAGGAGGCATATGCAGAGATACGATATGATAGCAAGTTTTGGCCTGCAAAGTTGCGCTGTTATTCTTCTAATGCTTATATCTCCTCTGGTTGGCGGGCTTTTACTCGTGACAACAAGTTAAAAGCTGGAGATGTTTGTATCTTTGAGCTCATCAAAGAAAACGATGCAATCCTTGACGCTCATATTCATAGAGCGGAAGGTTAG 1326 0.4012 MASSVIRFFKIVLTKSLQDGTLKVPKKFCKKYGDGLPNPVYLKPPDGTKWKIDWTKKDGEILFEKGWKELATYYSLDNGHLLWFEYNGTSEIEVHIFDMSGLEIDYPSDDHISCDNSVGILNERSWKRKEVKAEPESSSPYRSKRLKRTVKTRDVESSPNKQNRKQHVNNEEDSQSEETQHKKPISRCKTRYVDDFYPGTSGFQALNEAQRFNSRNPFFIVKIRQANVSRSKVNFDASFFRKYCNKEQNVQIRFQGKLLPAKMQCYPYLSQAVISSGWGLFARESKLQAGDVIVFELIKRDVPTFDVHIYRAQAFEPGARGLQYPIETWQFRCPKEFKNFESENPSFIIKITRKGLLRARAGIPRVFFKKYFEKEEAYAEIRYDSKFWPAKLRCYSSNAYISSGWRAFTRDNKLKAGDVCIFELIKENDAILDAHIHRAEG 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc91648g00002 441 ProSiteProfiles B3 DNA-binding domain profile. 346 440 IPR003340 GO:0003677
Stsc91648g00002 441 SMART B3_2 348 440 IPR003340 GO:0003677
Stsc91648g00002 441 SMART B3_2 218 313 IPR003340 GO:0003677
Stsc91648g00002 441 SMART B3_2 8 100 IPR003340 GO:0003677
Stsc91648g00002 441 ProSiteProfiles B3 DNA-binding domain profile. 7 100 IPR003340 GO:0003677
Stsc91648g00002 441 Gene3D - 3 101 IPR015300 -
Stsc91648g00002 441 SUPERFAMILY DNA-binding pseudobarrel domain 6 100 IPR015300 -
Stsc91648g00002 441 Pfam B3 DNA binding domain 354 438 IPR003340 GO:0003677
Stsc91648g00002 441 Pfam B3 DNA binding domain 218 312 IPR003340 GO:0003677
Stsc91648g00002 441 Pfam B3 DNA binding domain 8 98 IPR003340 GO:0003677
Stsc91648g00002 441 Gene3D - 201 315 IPR015300 -
Stsc91648g00002 441 Gene3D - 330 440 IPR015300 -
Stsc91648g00002 441 CDD B3_DNA 217 311 IPR003340 GO:0003677
Stsc91648g00002 441 PANTHER B3 DOMAIN-CONTAINING 382 427 - -
Stsc91648g00002 441 SUPERFAMILY DNA-binding pseudobarrel domain 340 438 IPR015300 -
Stsc91648g00002 441 MobiDBLite consensus disorder prediction 129 186 - -
Stsc91648g00002 441 CDD B3_DNA 363 428 IPR003340 GO:0003677
Stsc91648g00002 441 CDD B3_DNA 7 98 IPR003340 GO:0003677
Stsc91648g00002 441 ProSiteProfiles B3 DNA-binding domain profile. 274 313 IPR003340 GO:0003677
Stsc91648g00002 441 SUPERFAMILY DNA-binding pseudobarrel domain 212 312 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc91648g00002 Stsc-Chr91648 8362 11363 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc91648g00002 338 439 B3 DNA Binding Superfamily AT3G18990 32.039 3.00e-10 59.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Stsc91648g00002 B3 2.2e-07 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc91648g00002 - - adu:107471605 543.502