Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc91648g00001 ATGGCATTGCAGAAGCTACCAAAGAAATTCAGTAAGAAATATGGTGATAGTTTGCCAAATCCAGTGTATCTCAAGCCTCCGGATGGCACTGAATGGAAGATAGATTGGACTAAGCAAGATGGTGAAATTCTGTTTGAGAAGGGTTGGAAAGAGTTTGCAAAATATTACTCTCTGGATAATGGCCATTTGTTGTGGTTTGAGTACAATGGAACTTCTGAGATTGAAGTACACATACTTGACCCGAGTTGCCTTGAAATAGACTATCCTTCCAATGAAAACTCGGTTGGGATCTCGAAGAAACAGCAACGGCAAAAGAAAAAAGTGAAAGCAGAACCAAAGCCATCATCTCCTTCTAGAAGTAAACGATTGAAACGGACTGCCGAAACTACGGATGAGGAAGGAAGCCCCGATACACAGAACTGGAAACAAAATGGCAATAGTGAAGAAGATAGCCAATCTAAAGAGACACAGCATAAGATGCCAACAAGACGACGTAAAAGGCAATTTGTGGATGATTTCTCTCCTTGGACCCCTGGGTTTCAAGCTCTGAAAGAAGCTCAGAAGTTCAAGTCAGAAAATCCCTCTTTCATAGTCAAGATAACAAAAGCTAATACATCAGTATCACCAGCTAATTTCCAAGCTTCCTTTTATAAAAAACATTTTAAAGATGATGAGCAGCATATACAGATAAGGTTTGAGAGGGAGTTATTGCCTGCAAAGGTTTTGTATTATCGAGGTCTTGCCGTTATCTCTGCTGGTTGGCGCCTTTTTACTCGAAGAAGTAAATTACAACCCGGGGATGTTACTGTCTTTGAGCTCGTCAATAGAGAAGATCCACTGCTTGACGTTCATATTTATAGAGCCCATGGTTAG 873 0.4066 MALQKLPKKFSKKYGDSLPNPVYLKPPDGTEWKIDWTKQDGEILFEKGWKEFAKYYSLDNGHLLWFEYNGTSEIEVHILDPSCLEIDYPSNENSVGISKKQQRQKKKVKAEPKPSSPSRSKRLKRTAETTDEEGSPDTQNWKQNGNSEEDSQSKETQHKMPTRRRKRQFVDDFSPWTPGFQALKEAQKFKSENPSFIVKITKANTSVSPANFQASFYKKHFKDDEQHIQIRFERELLPAKVLYYRGLAVISAGWRLFTRRSKLQPGDVTVFELVNREDPLLDVHIYRAHG 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc91648g00001 290 ProSiteProfiles B3 DNA-binding domain profile. 250 289 IPR003340 GO:0003677
Stsc91648g00001 290 SUPERFAMILY DNA-binding pseudobarrel domain 5 89 IPR015300 -
Stsc91648g00001 290 MobiDBLite consensus disorder prediction 133 147 - -
Stsc91648g00001 290 PANTHER B3 DOMAIN-CONTAINING 6 277 - -
Stsc91648g00001 290 ProSiteProfiles B3 DNA-binding domain profile. 1 82 IPR003340 GO:0003677
Stsc91648g00001 290 MobiDBLite consensus disorder prediction 108 132 - -
Stsc91648g00001 290 SUPERFAMILY DNA-binding pseudobarrel domain 189 289 IPR015300 -
Stsc91648g00001 290 Gene3D - 180 289 IPR015300 -
Stsc91648g00001 290 CDD B3_DNA 6 80 IPR003340 GO:0003677
Stsc91648g00001 290 MobiDBLite consensus disorder prediction 92 172 - -
Stsc91648g00001 290 SMART B3_2 2 82 IPR003340 GO:0003677
Stsc91648g00001 290 SMART B3_2 196 289 IPR003340 GO:0003677
Stsc91648g00001 290 Gene3D - 2 83 IPR015300 -
Stsc91648g00001 290 Pfam B3 DNA binding domain 6 80 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc91648g00001 Stsc-Chr91648 3974 6838 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc91648g00001 5 289 B3 DNA Binding Superfamily AT3G18990 26.708 4.79e-25 101
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Stsc91648g00001 B3 3.6e-11 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc91648g00001 - - adu:107471605 325.094