Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc91635g00001 ATGGGTTGGTTAGCCAAGTTGCTTAAGGGCTCAAACCATAGAGGACAATACCATGGCAAATATGGAGAGGACAGAATTTGGGATAACCATCATACTTCAGTGGATGATTTGAACGATGTTGAGAAAGAGGACATTGATTGTGCAATTGCACTCTCTCTGTCAGAGCAAGATCAGAAAGGAAAAGGTGTTGTTGAGGAAGATTCTCAATCTGAAGAAGATGAACAACTTTGTAAAATTGATGATGATGATGAGGAAGATGAGCATATTTGTACAGTTCAACAAGAGGAAGATGAACATCTTTCGAAAGTTCAACTTGATGAAGATGAGCAACTTGCCAGGGCAATCCAAGAAAGCTTGAACATTGAATCTCCTCCTAGTCCTAGATATGACAATGATTCTATTTTCCAACCTTTATCAAACCTCTTTCCACCAGGATACAGAATCTGTGCTGGATGCAAAGCTGAAATTGGCCATGGAAGATTTTTAAGTTGCATGGGAGCTGTCTGGCATCCACAATGTTTCCGCTGCAACGCTTGCAATCTTCCAATAACTGATTATGAGTTTTCCATGTCTAGCAATTTTCCGTACCATAAATCTTGCTACAGGGAGCAACACCACCCAAGATGTGATGTTTGCAATAACTATATCCCAACTAATTCAGCTGGTCTAATTGAGTATAGAGCTCATCCTTTCTGGCTACAAAAATATTGTCCATCACATGAAAGGGATGGAACTCCTCGTTGTTGTAGCTGCGAAAGAATGGAGCCAAGGGATACAAAGTATCTTTTGCTTGATGACGGTCGAAAGCTATGTCTAGAGTGTCTGGACTCATCAATCATGGATACTCATGAATGCCAACCTCTCTACCTTGAAATACAAGAGTTCTATGAAGGTTTAAACATGAAAGTGGAGCAGCAAGTTCCTATGCTTCTGGTTGAGAGACAAGCACTGAATGAGGCCATGGAGGGAGAAAAGAATG 979 0.4086 MGWLAKLLKGSNHRGQYHGKYGEDRIWDNHHTSVDDLNDVEKEDIDCAIALSLSEQDQKGKGVVEEDSQSEEDEQLCKIDDDDEEDEHICTVQQEEDEHLSKVQLDEDEQLARAIQESLNIESPPSPRYDNDSIFQPLSNLFPPGYRICAGCKAEIGHGRFLSCMGAVWHPQCFRCNACNLPITDYEFSMSSNFPYHKSCYREQHHPRCDVCNNYIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLLLDDGRKLCLECLDSSIMDTHECQPLYLEIQEFYEGLNMKVEQQVPMLLVERQALNEAMEGEKN 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc91635g00001 326 PANTHER PROTEIN DA1-RELATED 2 3 326 IPR045218 -
Stsc91635g00001 326 SMART uim 40 59 IPR003903 -
Stsc91635g00001 326 SMART uim 106 125 IPR003903 -
Stsc91635g00001 326 ProSiteProfiles LIM domain profile. 147 207 IPR001781 -
Stsc91635g00001 326 FunFam Protein DA1-related 1 143 202 - -
Stsc91635g00001 326 CDD LIM_DA1 149 201 - -
Stsc91635g00001 326 Pfam Protein DA1 298 326 IPR022087 -
Stsc91635g00001 326 MobiDBLite consensus disorder prediction 56 76 - -
Stsc91635g00001 326 SMART lim_4 148 200 IPR001781 -
Stsc91635g00001 326 ProSitePatterns LIM zinc-binding domain signature. 149 183 IPR001781 -
Stsc91635g00001 326 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 175 230 - -
Stsc91635g00001 326 Pfam LIM domain 149 204 IPR001781 -
Stsc91635g00001 326 Gene3D Cysteine Rich Protein 143 207 - -
Stsc91635g00001 326 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 106 125 IPR003903 -
Stsc91635g00001 326 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 142 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc91635g00001 Stsc-Chr91635 3 2393 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Stsc91635g00001 LIM 3.7e-09 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc91635g00001 - - qsa:O6P43_024715 554.288