Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc91628g00002 ATGGATACTTCTTCTTCACCGCATACAGATCGCAGGGCAGAAGCTCTCGGAGACCTTCGTGTCCTTCCCGATGAAACCCTCTCCTCAATCCTCGACTTTCTCTCTCCCCGCGACGTTGCTCGCCTTGCCTGCGTTAGCAGTGTCATGTACATATTGTGCAATGAGGAACCACTGTGGATGAGTCTGTGCCTTAAAGGAGCATCTGGTTTACTTCAGTACCAAGGCTCTTGGAAGAAAACTACCCTGCTGCATAATGAGAATCTGCCAGACAAATACAAAGAGTATCAACGGCGGCCATTATACTTTGATGGGTTCAACTCTTTATTTTTGTACAGGAGATTATACCGATGTCATACCACATTGGAAGGGTTTCATGCAGATGATGGAAATGTGGAAAGAAGGAAAGACTTGTCTTTGAAGGATTTCTATGACCAGTATGATGCAAAGAAACCGGTTATGCTTACTGGATTGGCTGAGACATGGCCTGCCAGGCATAAATGGACAACAGATCAGCTCTTGCAAAACTATGGAGATGTAGCATTTAAAATTTCCCAAAGGAGTTCTCGGAAGGTCTCCATGAAGTTCAAGGATTATGTCTCATACATGGAAGTTCAGCACGATGAAGATCCCTTATATATTTTTGATCAAAAGTTTGGTGAAGTTGCACCTAGCTTGTTGAAGGATTATTCTGTACCTCATCTTTTTCAAGAAGACTTCTTTGATATCTTAGATGCTGAACAAAGACCATCCTATAGGTGGCTAATAATTGGACCACAGAGATCTGGCGCCTCTTGGCATGTTGATCCTGCTCTTACTAGTGCATGGAATACTCTTCTTTCTGGCCGTAAAAGGTGGGCATTATATCCTCCAGGAAAGGTGCCTTTGGGTGTGACGGTGCATGTTAATGAAGACGACGGTGATGTCAATATTGAGAGTCCGTCATCACTTCAGTGGTGGCTGGACTATTATCCTCTCCTTCCTGATGAAGACAAGCCAATTGAGTGTACACAGCTACCAGGAGAGACAATTTATGTTCCCAGTGGATGGTGGCACTGTGTTTTAAATTTAGAAACAACTATTGCTGTCACTCAGAATTATGTGAATTCAAATAATTTTGAATTTGTGTGTTTGGACATGGCTCCTGGTTATCGTCATAAAGGAGTTTGTCGTGTTGGATGGCTTGCTTTAGATGAAGAAACTTATGAAAATGTTAGACAGAGCATGGCATGTTATTCTGATTGGTCAAGGAAAGAGAAAAGAGCAAAAACTATCAAAGATGTAGATAATGTAAATTCTGAAAGTACCGTAAATGGTGCATCTAGGACCTATAGTTTATGGAAAGATGGATTTTCCTATGATATAAATTTCCTATCCATGTTTTTGGATAGAGATAGAGACCACTACATTTCCCCTTGGAGTGTAGGCAACAGCATTGGTCAAAGAGAACTAAGGGAATGGTTATCGAAGCTTTGGATTCAAAAACCACAAATGAGAGAGCTTATATGGAAGGGAGCATGTATTGCACTAAATGCGGACAAGTGGCTGGAATGCGCATCAAAAATTTGTTCCATCCACAATTTACCCCTTCCCAGTGATGATGAAAGGCTTCCAGTTGGCTCGGGTAGCAATCCTGTTTACCTAGTGGGGAACTCTGTTGTTAAGATTTTTGTTGAAGGAGGACTGGAAGCTTCTCTTTATGGTTTTGGTACAGAGCTAGAGTTTTACAGCCTACTTAATGAAATCAATTCCCCTCTCAAGAAACACATTCCTAGTATTTTGGCCACTGGGATTATTTATCTTGAAGATGGAACTTTTTACAATTTAACATGGGATGGAAAAGGAGTCCCTGATGTCATTTCAAAGAGCAATCTCATCAAGACAAAATGTGATGTTCATGGTTTCTCATTTGGGATATGGGGCAAGAAACAACTTGAGTATAAGAATGCTGGGATGGAAATGGATGGATCAGATAGTTTAGGTGGTCACTCAAGTATGTGGCCATATATGGTAATAAAACGATGTGAAGGGAAAATGTTCGCATATTTACGAGATACACTGTCATGGGAAGATGCAATGAACTTGGCCTCCTTCTTAGGGGAGCACCTGAACCACCTTCATCTCTTACCTCATCCACCTTTGAACATTTCATCTTTTACAGATATTGAACATGAATTGAGCTTTACTGGGACCAATAGTTGTGGTGCAACTGTTAATTATAAATCAAGCACTGCAGCAGAATGGGGACTCTTTCTGAGAAACTTAGCAAAGATGCGGAAGAATGTTTCAAGCCGTTTGACCAAGTGGGGATATCCAATCCCTAGCAATTTGATAGAGAAAATTGACGAATATGTCCCACCTGATTTTGCTAAGCTGCTAAACATTATTCAGAATCTCCCAAGTGGTGCTTGCAAGCCTTGCTCTTGGATACACTCTGATATTATGGATGATAACATTTACATGGAACCATCTTTGGCTTGTTCTACCTCAAGTGGGAATACAGAAGATGCTTCCATGGGAGATCATGGTCATTTGAGCAGCTATGATGAAGTGAAATCCTGGCGTCCTAGTTATATCCTTGATTTCAGTGATATTTCAATAGGTGACCCTTTGTTTGACTTGATACCAATTTATTTAGATGTTTTTAGAGGTGATTCAGATCTCCTAAAGCGATTTTTAGAAAGCTACAAACTTCCTTTTGCAAGTCCCATATCAAAGTATGAGTCAACAGAGGGCGGTCAGAAGTTTGCCCGACTTTCATATGTTGCCATGTGCTATTGTATTTTGCATGATGAGAATGTGTTGGGAGCTATTTTTAGTATATGGAAAGAATTGAGATCAGCAAAGTCATGGGAAGAAGTTGAGCTAAAAGTGTGGGGCGAGTTGAACAATTACAATGGCTTTCCTTGA 2907 0.408 MDTSSSPHTDRRAEALGDLRVLPDETLSSILDFLSPRDVARLACVSSVMYILCNEEPLWMSLCLKGASGLLQYQGSWKKTTLLHNENLPDKYKEYQRRPLYFDGFNSLFLYRRLYRCHTTLEGFHADDGNVERRKDLSLKDFYDQYDAKKPVMLTGLAETWPARHKWTTDQLLQNYGDVAFKISQRSSRKVSMKFKDYVSYMEVQHDEDPLYIFDQKFGEVAPSLLKDYSVPHLFQEDFFDILDAEQRPSYRWLIIGPQRSGASWHVDPALTSAWNTLLSGRKRWALYPPGKVPLGVTVHVNEDDGDVNIESPSSLQWWLDYYPLLPDEDKPIECTQLPGETIYVPSGWWHCVLNLETTIAVTQNYVNSNNFEFVCLDMAPGYRHKGVCRVGWLALDEETYENVRQSMACYSDWSRKEKRAKTIKDVDNVNSESTVNGASRTYSLWKDGFSYDINFLSMFLDRDRDHYISPWSVGNSIGQRELREWLSKLWIQKPQMRELIWKGACIALNADKWLECASKICSIHNLPLPSDDERLPVGSGSNPVYLVGNSVVKIFVEGGLEASLYGFGTELEFYSLLNEINSPLKKHIPSILATGIIYLEDGTFYNLTWDGKGVPDVISKSNLIKTKCDVHGFSFGIWGKKQLEYKNAGMEMDGSDSLGGHSSMWPYMVIKRCEGKMFAYLRDTLSWEDAMNLASFLGEHLNHLHLLPHPPLNISSFTDIEHELSFTGTNSCGATVNYKSSTAAEWGLFLRNLAKMRKNVSSRLTKWGYPIPSNLIEKIDEYVPPDFAKLLNIIQNLPSGACKPCSWIHSDIMDDNIYMEPSLACSTSSGNTEDASMGDHGHLSSYDEVKSWRPSYILDFSDISIGDPLFDLIPIYLDVFRGDSDLLKRFLESYKLPFASPISKYESTEGGQKFARLSYVAMCYCILHDENVLGAIFSIWKELRSAKSWEEVELKVWGELNNYNGFP 968
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc91628g00002 968 Gene3D - 11 93 - -
Stsc91628g00002 968 ProSiteProfiles F-box domain profile. 16 62 IPR001810 GO:0005515
Stsc91628g00002 968 SMART cupin_9 220 378 IPR003347 -
Stsc91628g00002 968 PANTHER ARGININE DEMETHYLASE AND LYSYL-HYDROXYLASE JMJD 16 576 - -
Stsc91628g00002 968 FunFam F-box protein At1g78280 111 368 - -
Stsc91628g00002 968 SUPERFAMILY Protein kinase-like (PK-like) 665 898 IPR011009 -
Stsc91628g00002 968 SUPERFAMILY F-box domain 8 69 IPR036047 GO:0005515
Stsc91628g00002 968 Gene3D Cupin 115 368 - -
Stsc91628g00002 968 ProSiteProfiles JmjC domain profile. 220 383 IPR003347 -
Stsc91628g00002 968 Pfam Cupin-like domain 148 370 IPR041667 -
Stsc91628g00002 968 SUPERFAMILY Clavaminate synthase-like 125 375 - -
Stsc91628g00002 968 Pfam F-box-like 21 65 IPR001810 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc91628g00002 Stsc-Chr91628 6781 13961 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc91628g00002 10 964 Glycosyltransferase AT1G78280 60.247 0.0 1196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Stsc91628g00002 Cupin_8 6.3e-24 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc91628g00002 - - gmx:100792541 1629.77