Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc91611g00001 ATGGAGTACGGTAGCGGAGGGAGTGGTGGGTCCCCTGGGGAGCACCACCATCACCACCACAACCACAACGACGCTTCTTCTTCCGAGCGCAGGAAGAAGCGCTACCACCGTCACACTGCTAATCAGATTCAACGGCTTGAAACGGTGTTCAAGGAGTGTAATCACCCAGATGAGAAGCAGAGATTGCAGTTAAGCAGAGAATTAGGCTTGGCTCCAAGGCAGATCAAATTTTGGTTCCAGAACAGAAGGACTCAGATGAAGGCGCAGGGAGAGAGAGCGGATAACTGTGCACTGAGGGCAGAGAATGATAAGATACGTTGCGAGAACATAGTCATAAGGGAGGCCCTCAAGAACGTTATCTGCCCCTCTTGTGGTGGTGGCCCCTCCCTCAACGACGATTCCTATTTCGATGAACAAAAATTGAGACTTGAAAATGCCCAGCTCAAAGAGGAGCTTGATAGAGTGTCTAGCATTGCGGCTAAGTACATTGGAAGGCCAATTTCACAGCTGCCGCCAGTTCAGCCAATTCACATATCCTCCCTTGATTTGACCATGTCGAGTTTCGGGGGCCACGGCGGATACGGCGGCGGCCCCTCCCTCGACCTTGACCTCCTCCCGGGGAGTTCTTCCTCGGCTATGCCTCCGCAAGTGCCGTACCAGCCGGCTTGTCTCTCGGACATGGACAAGTCTCTAATGTCAGGCATTGCCTCTAATGCGATGGAGGAATTGCTGAGCCTCTTGCAGACCAATGAGCCGTTGTGGATTAAGTCAAGCACGGATGGGAGAGATGTTCTTAATCTTGATACATATGATAAGATGTTTCCAACGGCTAATAGTCACTTGAAGAACCCCAATATTAGGATAGAAGCTTCTAGAGACTCTGGTGTTGTTATCATGAATGGCCTAACTCTGGTTGACATGTTCATGGACCCTAGCAAGTGGATGGAGCTGTTTCCCACAATTGTAACGGCTGCAAGAACAATTGAAGTTATATCTACTGGGATGATGGGTGGTCATAGTGGTTCTCTTCAATTGGACATGCCTAATGGATACTCCAAGGTAACTTGGGTTGAACATGTAGAGGTCGAAGATAAAACTCCGGTTCATCGCCTTTACCGGAATCTGGTTTATAATGGAATGGCATTTGGAGCTCAGAGATGGCTTGCTGTGCTGCAGAGGATGTGTGAAAGATTGGCTTGTTTAATGGTCACAGGCAATTCCACCAGGGACCTTGGAGGAGTAATTCCTTCTCCAGAGGGGAAGAGGAGCATGATGAGGCTTGCACAAAGAATGGTCACCAATTTTTGCGCCAGCATTGGCACGTCGGCGGGCCACCGGTGGACCACGCTGTCCGGGATGAACGAGATTGGTGTGAAGGTCACAGTCCACAAGAGTACAGACCCCGGGCAACCTAGCGGCGTGGTGCTGAGCGCCGCCACCACCATTTGGCTCCCTCTCCCTCCACAAACCGTCTTCAATTTCTTCAAGGATGAGAGAAAAAGACCTCAGTGGGATGTTCTTTCCAATGGCAATGTACAAGAAGTGGCTCATATAGCAAATGGTTCTCACCCGGGTAACTGTATATCTGTCCTTCGGGCATATAACACAAGCCAGAATAACACACTGATACTACAAGAGAGCTGCATTGATCCATCAGGCTCCATAGTAGTATACTGTCCGGTTGAGCTTCCATCGATCAACATAGCCATGAGCGGCGAGGATCCGTCATATATCCCACTAGTACCGTCCGGTTTCACGATCACCCCGGACGGAAACCACCATGATCACCAAGGCGGCAGTGACGGCGCATCTACAAGCTCAACCCCAAGCAGAAGCAGCAGCACCATGGTGGGAATGAGATCCGGAGGGTCACTGGTGACGGTTGCATTCCAAATACTAGTGAGTAGCTTGCCATCTGCAAAGCTCAACATGGAGTCTGTAGCAACTGTTAATAACCTCATCAGCACCACTGTTCAGCAAATTAAAGCTGCCTTGAATTGTCCTACTTCCTGA 2013 0.5007 MEYGSGGSGGSPGEHHHHHHNHNDASSSERRKKRYHRHTANQIQRLETVFKECNHPDEKQRLQLSRELGLAPRQIKFWFQNRRTQMKAQGERADNCALRAENDKIRCENIVIREALKNVICPSCGGGPSLNDDSYFDEQKLRLENAQLKEELDRVSSIAAKYIGRPISQLPPVQPIHISSLDLTMSSFGGHGGYGGGPSLDLDLLPGSSSSAMPPQVPYQPACLSDMDKSLMSGIASNAMEELLSLLQTNEPLWIKSSTDGRDVLNLDTYDKMFPTANSHLKNPNIRIEASRDSGVVIMNGLTLVDMFMDPSKWMELFPTIVTAARTIEVISTGMMGGHSGSLQLDMPNGYSKVTWVEHVEVEDKTPVHRLYRNLVYNGMAFGAQRWLAVLQRMCERLACLMVTGNSTRDLGGVIPSPEGKRSMMRLAQRMVTNFCASIGTSAGHRWTTLSGMNEIGVKVTVHKSTDPGQPSGVVLSAATTIWLPLPPQTVFNFFKDERKRPQWDVLSNGNVQEVAHIANGSHPGNCISVLRAYNTSQNNTLILQESCIDPSGSIVVYCPVELPSINIAMSGEDPSYIPLVPSGFTITPDGNHHDHQGGSDGASTSSTPSRSSSTMVGMRSGGSLVTVAFQILVSSLPSAKLNMESVATVNNLISTTVQQIKAALNCPTS 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc91611g00001 670 MobiDBLite consensus disorder prediction 588 619 - -
Stsc91611g00001 670 Pfam Homeodomain 32 87 IPR001356 GO:0003677
Stsc91611g00001 670 ProSiteProfiles 'Homeobox' domain profile. 29 89 IPR001356 GO:0003677
Stsc91611g00001 670 MobiDBLite consensus disorder prediction 12 30 - -
Stsc91611g00001 670 SUPERFAMILY Homeodomain-like 12 89 IPR009057 -
Stsc91611g00001 670 SUPERFAMILY Bet v1-like 232 397 - -
Stsc91611g00001 670 MobiDBLite consensus disorder prediction 1 39 - -
Stsc91611g00001 670 CDD homeodomain 31 89 IPR001356 GO:0003677
Stsc91611g00001 670 SMART START_1 234 397 IPR002913 GO:0008289
Stsc91611g00001 670 SMART HOX_1 30 93 IPR001356 GO:0003677
Stsc91611g00001 670 FunFam Homeobox-leucine zipper protein HDG1 18 105 - -
Stsc91611g00001 670 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 346 666 IPR042160 -
Stsc91611g00001 670 MobiDBLite consensus disorder prediction 598 619 - -
Stsc91611g00001 670 SUPERFAMILY Bet v1-like 418 662 - -
Stsc91611g00001 670 ProSiteProfiles START domain profile. 340 400 IPR002913 GO:0008289
Stsc91611g00001 670 ProSitePatterns 'Homeobox' domain signature. 64 87 IPR017970 GO:0000981|GO:0006355
Stsc91611g00001 670 Gene3D - 15 103 - -
Stsc91611g00001 670 ProSiteProfiles START domain profile. 225 334 IPR002913 GO:0008289
Stsc91611g00001 670 Pfam START domain 340 397 IPR002913 GO:0008289
Stsc91611g00001 670 Coils Coil 138 158 - -
Stsc91611g00001 670 CDD START_ArGLABRA2_like 229 396 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc91611g00001 Stsc-Chr91611 7979 11515 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc91611g00001 340 670 Homeobox Transcription Factor Family AT1G73360 64.865 2.20e-137 417
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Stsc91611g00001 START 2.6e-12 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc91611g00001 K09338 - qsa:O6P43_005268 988.023