Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc91589g00001 ATGTTGGGGCGCAAAAATGTGTTGGATGAGGCTCCATTTCAGTATCAAACCAATGAAGCAAATCAACTGCAGTTGTTGGGGAATATACAAGCTGGAGGCAATATTGACCCTGTTAATTACTTTGGAAATGAGTATCTCAGCTCCATGTTTCAGTCTAATAAAAGAAGCAGAGAAGCAGAAGATATATTGAAGCAGCAAAAGCTTCAGATTTCCTTAAATTACAATGTCTGTCAGGATGAAGCTGATCAAACAGCAAACATTCCAAATCCAAATCAAGTGTCAACAGGATTGAGGCTTTCTTATGACGATGATGAGCGCAATTCTTCTGTTACTTCTGCTAGTGGTAGCATGACTGCCGCACCTTCAATCATATTGCCCCTTAGTGACAATTTCAGAACTGAGCTTGATAGGCAGCAAGAAGAGCTGGACCAGTATATTCAGCTACAGAAGGATCAATTGTCAAAAGCAGTGAGAGATATGAAACAGAAACACATGACCTCTCTCTTTTATGCCATTGAGAAAGGTGTTAGCAAGAAGCTAAGGGAAAAAGATGCAGAGATAGAGAACATTAACCAGAAAAACAAGGAACTAGCAGAGAGAATAAAACAAGTATCCATGGAAGCACAAAGCTGGCACTACAAAGCAAAATATAATGAACAAGTTGTCAATGTATTAAGGAACAATCTCCAACAAGCAATTACACAAGGAGTAGAACAAGGAAAGGAAGGGTTCGGAGACAGTAGTGAAGTTGATGATGCCACCTCATATATTGATTTGAATAACTTGATCAGCATTCCAGGTGCACAAATAAAATCTACTTTGAAGAAACATCAATGCACAGAGAATCTGATGTGCAGAGTGTGCAAGGCGAAGAAGGTTTCCATGTTGTTGATGCCTTGCAGACACTTATGCTTGTGTGACAACTGTGATAGATATATCAATGTTTGTCCTGTATGCCAATTGATGAAAACTCAAAGTATCCAGGTTTATCTGTCCTAA 999 0.3914 MLGRKNVLDEAPFQYQTNEANQLQLLGNIQAGGNIDPVNYFGNEYLSSMFQSNKRSREAEDILKQQKLQISLNYNVCQDEADQTANIPNPNQVSTGLRLSYDDDERNSSVTSASGSMTAAPSIILPLSDNFRTELDRQQEELDQYIQLQKDQLSKAVRDMKQKHMTSLFYAIEKGVSKKLREKDAEIENINQKNKELAERIKQVSMEAQSWHYKAKYNEQVVNVLRNNLQQAITQGVEQGKEGFGDSSEVDDATSYIDLNNLISIPGAQIKSTLKKHQCTENLMCRVCKAKKVSMLLMPCRHLCLCDNCDRYINVCPVCQLMKTQSIQVYLS 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc91589g00001 332 PANTHER SBP (S-RIBONUCLEASE BINDING PROTEIN) FAMILY PROTEIN 39 329 IPR017066 -
Stsc91589g00001 332 FunFam probable BOI-related E3 ubiquitin-protein ligase 2 266 331 - -
Stsc91589g00001 332 Coils Coil 180 207 - -
Stsc91589g00001 332 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 267 332 IPR013083 -
Stsc91589g00001 332 ProSiteProfiles Zinc finger RING-type profile. 285 320 IPR001841 -
Stsc91589g00001 332 Pfam Zinc finger, C3HC4 type (RING finger) 282 320 - -
Stsc91589g00001 332 Coils Coil 128 148 - -
Stsc91589g00001 332 CDD mRING-HC-C3HC5_CGRF1-like 284 319 - -
Stsc91589g00001 332 PIRSF SBP1_RNase_bind 3 332 IPR017066 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc91589g00001 Stsc-Chr91589 2750 5316 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc91589g00001 281 330 C3H Transcription Factor Family AT1G73950 40.000 4.14e-08 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc91589g00001 K19042 - gmx:100791550 485.337