Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc91588g00002 ATGGAACCTTCTGAATCAGAATCAGTTGGTTCCTCCACCACCAAAGACCCACAATTGGGTCCTCAGTGTGAAAATTCTTCACCTTTTCCCAATGATCATCACGATCCTCAACAATCAGAGCCAGATCTCAGTGAAAATTTAGGGTTGCAGGATGAAACTCGTGATGAACTTGGTGCAGAGTTCCATGACAAGTTGGATTTGAAGGAGGAGGATGAAAGGGTAGCTGAAACTGAGAAGAAAGATTCAAACTTTGAAGATGGTAGTAGAGAATTTGGTGGTGAAGAAGTGGGTGGTGAAAGTGGTTGTGCCCCAGAAAGTGGTGAAGCACAAGGGAGTGATGATCATGATGGTTGGAATGATGATGAAGGTTATGGCTGGAATGATAATGTGAAAGAGAGTGAGGTTGATAAGGTTGGTGGAGATTTTGATGGTGATGGTAATAATGATGATGATGATGATGGTGGTGGTGTTGAAGTTGAAGTTGAAGGTGATGATGAAGAAGTGGAGAAGAAGAAAGACAGAAGCAGTGGTAGAGTTCAGCAGCAGCAGTATCCACTGAGGCCTGATGCTGAAGATTGTGCATTCTATCTCAAAACTGGAACTTGCAAATTTGGATTCAATTGCAAGTTTAATCATCCACTTGGTAGGAGGAAGAACCAGGTTCTTAAAGAAAAGGTTGGCGGAGAAAGGGAAGAACCAGGAGAAAAATCAGGCCAGATAGAATGCAAGTTTTATTTAAGATCTGGAGGCTGTAAATTTGGAAAAGCTTGTAAATTTAACCACACAAGAGCAAAGTCTTCAGCAGCAGCCGCTGCTCCACTTCTCGAGCTTAACTTTCTTGGCCTGCCTGTTCGATTGGGAGAGAAGCAGTGCCCCTATTACATGCGGACAGGCTCCTGTAAGTTTGGAGCAAATTGCAAGTTTAATCATCCTGATCCTACTTCTGGTGGTGGAGTTGGTGATTCTGTTTCGGGATTTGGTAATGGTAGTTATGTCTCCCTACAAGGCGCACCACAACCTGCACCATCTTGGTCATCTTCAAAACCATTAAATGAGACTACTACTTTTGTGCCAATTATGCTTCCACCTAATCAAGCGGTTTCTCCCCGTAGTCCTGAATGGAACAGATACCAGGCACCAGTCTATCAGCACCCACCGTCGGCATATATCATGAACAATTCAACAATTGAAACAGCTATGTATATGCACCAACCAAAGCAGGCACCAGTTGAAGAGTTTCCTGAAAGACCTGGTGAACCCGAATGCAGCTACTTCTTAAAAACTGGGGATTGCAAGTTCAAATCCAATTGTAAATTCCACCATCCGAAGAATCGGGGTGCAAGATTACCTCCTACTCTCAGTGACAAGGGTCTGCCTCTGAGACCTGACCAAAATATATGCTCGCATTACAGCCGCTATGGGATTTGCAAATTTGGACCGGCTTGTAGGTTCGACCACCCGACAAACCCATCTCCCCCAAGCAGTCCAGGATTTGATCAGCAAACTTCTTATGCAGACACGGCCACTGAGTTGACTGCAATGGAAGGAAATGGAGATGCTAATGATGATGCACTTCGGCAGCACGTGTAG 1590 0.4453 MEPSESESVGSSTTKDPQLGPQCENSSPFPNDHHDPQQSEPDLSENLGLQDETRDELGAEFHDKLDLKEEDERVAETEKKDSNFEDGSREFGGEEVGGESGCAPESGEAQGSDDHDGWNDDEGYGWNDNVKESEVDKVGGDFDGDGNNDDDDDGGGVEVEVEGDDEEVEKKKDRSSGRVQQQQYPLRPDAEDCAFYLKTGTCKFGFNCKFNHPLGRRKNQVLKEKVGGEREEPGEKSGQIECKFYLRSGGCKFGKACKFNHTRAKSSAAAAAPLLELNFLGLPVRLGEKQCPYYMRTGSCKFGANCKFNHPDPTSGGGVGDSVSGFGNGSYVSLQGAPQPAPSWSSSKPLNETTTFVPIMLPPNQAVSPRSPEWNRYQAPVYQHPPSAYIMNNSTIETAMYMHQPKQAPVEEFPERPGEPECSYFLKTGDCKFKSNCKFHHPKNRGARLPPTLSDKGLPLRPDQNICSHYSRYGICKFGPACRFDHPTNPSPPSSPGFDQQTSYADTATELTAMEGNGDANDDALRQHV 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc91588g00002 529 SUPERFAMILY CCCH zinc finger 459 487 IPR036855 GO:0046872
Stsc91588g00002 529 ProSiteProfiles Zinc finger C3H1-type profile. 416 444 IPR000571 GO:0046872
Stsc91588g00002 529 Gene3D - 227 315 - -
Stsc91588g00002 529 SMART c3hfinal6 187 214 IPR000571 GO:0046872
Stsc91588g00002 529 SMART c3hfinal6 236 263 IPR000571 GO:0046872
Stsc91588g00002 529 SMART c3hfinal6 416 443 IPR000571 GO:0046872
Stsc91588g00002 529 SMART c3hfinal6 285 312 IPR000571 GO:0046872
Stsc91588g00002 529 SMART c3hfinal6 461 488 IPR000571 GO:0046872
Stsc91588g00002 529 SUPERFAMILY CCCH zinc finger 188 216 IPR036855 GO:0046872
Stsc91588g00002 529 ProSiteProfiles Zinc finger C3H1-type profile. 461 489 IPR000571 GO:0046872
Stsc91588g00002 529 ProSiteProfiles Zinc finger C3H1-type profile. 187 215 IPR000571 GO:0046872
Stsc91588g00002 529 MobiDBLite consensus disorder prediction 1 34 - -
Stsc91588g00002 529 MobiDBLite consensus disorder prediction 145 164 - -
Stsc91588g00002 529 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 191 213 IPR000571 GO:0046872
Stsc91588g00002 529 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 418 443 IPR000571 GO:0046872
Stsc91588g00002 529 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 464 487 IPR000571 GO:0046872
Stsc91588g00002 529 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 288 311 IPR000571 GO:0046872
Stsc91588g00002 529 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 241 261 IPR000571 GO:0046872
Stsc91588g00002 529 SUPERFAMILY CCCH zinc finger 421 444 IPR036855 GO:0046872
Stsc91588g00002 529 Gene3D - 460 510 - -
Stsc91588g00002 529 Gene3D - 382 452 - -
Stsc91588g00002 529 ProSiteProfiles Zinc finger C3H1-type profile. 285 313 IPR000571 GO:0046872
Stsc91588g00002 529 MobiDBLite consensus disorder prediction 1 184 - -
Stsc91588g00002 529 PANTHER PROTEIN PHOSPHATASE RELATED 13 492 - -
Stsc91588g00002 529 MobiDBLite consensus disorder prediction 47 93 - -
Stsc91588g00002 529 ProSiteProfiles Zinc finger C3H1-type profile. 236 264 IPR000571 GO:0046872
Stsc91588g00002 529 MobiDBLite consensus disorder prediction 109 144 - -
Stsc91588g00002 529 SUPERFAMILY CCCH zinc finger 286 312 IPR036855 GO:0046872
Stsc91588g00002 529 Gene3D - 159 224 - -
Stsc91588g00002 529 SUPERFAMILY CCCH zinc finger 241 264 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc91588g00002 Stsc-Chr91588 4203 7398 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc91588g00002 184 487 C2H2 Transcription Factor Family AT3G02830 39.820 1.37e-71 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Stsc91588g00002 zf-CCCH 2.9e-08 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc91588g00002 - - gmx:100809626 524.628