Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc91588g00001 TTAGAACCTAAGGTCTATCAGAGAAGGGTTAATAGGCAGAAAAAGATAGTTGCTGGGAAATGGTGTGGTAAAGTTTGGATGTCCAGTCAGGTACATCCCCTTTTGGCAAAAAGAGATTCTGAAGATTTTGATGATGAGAAAATAGAGAGATCAGGAAGCATCCCTAAAAGAGAAACTAGTGCCAGAAAATCAGTTAAGAAGCGGAAAATGACTGTAGAGAATGGAAGAGCCAGGAAAGGTAAAGGTAGGTTTGCTGAGAGAGATGTGGATTCAGATAATTCAACTGAAGACAAACCTAACCAACATCTGAGGAGGACTCCTAGAAGTAAGCAAGCCAAGGACATTGAGAACGAAGATGCTGATTTGGAAGGGGACTATTCTCCTCCCTATCATCATAGAAAAGCTTTAAGCGATCAAACAAATTGCACTGGAAGTGATGCTGTTTCTGATGATTCACTTGATGATAAATTTATTGACAATGATGTGGTTTCGGATGATACAATGGTCTATGATTCTGATTCGCATCAGAGAGGAGAACATAGCAGAAGTCAAGTTGAAGAAGACATGGAAGATGCAGTTTCTGAGGATTCGTTGGATGATGGTTCTCTTCAGCTTCATAGAAAGAACTCTAAAAGCAAGCATGCCAGCTACATTAGAAAAGGCAGATGCCTTGCTGAGAAAGAGGAAATGACATCTGATGACCAACTGGAGCAGCAAAAGAAGAAGCTGCAACAGAGGAATCCTAAAAGCAGGCAAGCCAAATACCTTGCAAGAGAAGATGCGATATCAGATGGTCGATTGGAGGGCCATTGTCGCAAGTATAGAAAGACTCCTAAAGGTAGGGTGGCCAAATATGTTGCAGGGGAAGATGTATCATCTGATGAGCAATTGGAGAATCACAGTCGGAAGCAGCAAACAAGTCTTCCTAAAAGGCGGAAAAACAAAGGTGCATTGACTGATGACCAATTGGAGGACCATTTTCAGAAGCAGCAAAAGGGTGTTTCTAGGAGAAGGCAAAACAAAGGCATCCAAAGAGGGGCTAAAGACACAATGTCTGATGACCAATTGGAGGATGACATTCAGAAGCGGCAAACCAGTGTTTCTAGGAGAAGGCGAAACAAAGGAATTGAAAGAGAAGATGTAATGTCTGATGACGAAATGGAGGATCACGTACAGAAGCAGCGGAGAAGTATGCCTAGAAATAGGCAAAACAATAATTCTCATACGGTGCGTAAAACTCCTAAACGAAAGCAGGCTAAATGCATTGATGAGGAGGAGGAGGATGATGATATACATTCTGATGATGAAGTGGAAGATGATTCTCAGCAGAAACAGCAGAGAACTCTTAGAAGTAAGCAATCAAAACCAATGACACTTAAACAGATGAAGCAAGCTCACTCCCTCCAAATGAAAAATCAGACACCCCGGTCTGTAAAACGAGGTGCTCAGACACTAAAGAAATCAAAGGTGACTCATGTGCGGAATAAGCAATCTGGTAAATCCAGAGAGTTTAGTCTGAAAATGGAAGAGGAGGAGGAAGAAGGTGGACCTAGCTCACGCCTTAGGAAGAGAGTCCCAAAAGTCGAGGAGTCTGATGAAATATCAAAGGAAAAGCAAACCAAAAAGAAAAGGGTGAAGAATGCTACAGCTGCAAAGGCAGCTAGCAATGCTAAAATGAAGGACGAGGAAAAAGAATTCCAGTGTGACATTGATGGGTGCACCATGAGTTTTGGGTCAAAACAGGAGTTGATGCATCACAAGAGAAATATCTGTCCTGTAAAAGGCTGTGGAAAGAAGTTCTTCTCGCACAAATATCTGGTGCAGCACCGGCGAGTTCACGAGGATGACCGCCCCTTGAAGTGCCCTTGGAAGGGCTGCAAGATGAACTTCAAGTGGGCATGGGCTCGTACCGAACATATTCGAGTCCACACCGGTGCGCGACCGTATGTATGTGCTGAGCCAGGCTGCGGGCAAACGTTCAGATTCGTGTCCGATTTCAGTCGCCATAAGCGTAAGACTGGGCACTCAACAAAGAAAACTCGGCAATAG 2049 0.4353 LEPKVYQRRVNRQKKIVAGKWCGKVWMSSQVHPLLAKRDSEDFDDEKIERSGSIPKRETSARKSVKKRKMTVENGRARKGKGRFAERDVDSDNSTEDKPNQHLRRTPRSKQAKDIENEDADLEGDYSPPYHHRKALSDQTNCTGSDAVSDDSLDDKFIDNDVVSDDTMVYDSDSHQRGEHSRSQVEEDMEDAVSEDSLDDGSLQLHRKNSKSKHASYIRKGRCLAEKEEMTSDDQLEQQKKKLQQRNPKSRQAKYLAREDAISDGRLEGHCRKYRKTPKGRVAKYVAGEDVSSDEQLENHSRKQQTSLPKRRKNKGALTDDQLEDHFQKQQKGVSRRRQNKGIQRGAKDTMSDDQLEDDIQKRQTSVSRRRRNKGIEREDVMSDDEMEDHVQKQRRSMPRNRQNNNSHTVRKTPKRKQAKCIDEEEEDDDIHSDDEVEDDSQQKQQRTLRSKQSKPMTLKQMKQAHSLQMKNQTPRSVKRGAQTLKKSKVTHVRNKQSGKSREFSLKMEEEEEEGGPSSRLRKRVPKVEESDEISKEKQTKKKRVKNATAAKAASNAKMKDEEKEFQCDIDGCTMSFGSKQELMHHKRNICPVKGCGKKFFSHKYLVQHRRVHEDDRPLKCPWKGCKMNFKWAWARTEHIRVHTGARPYVCAEPGCGQTFRFVSDFSRHKRKTGHSTKKTRQ 682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc91588g00001 682 MobiDBLite consensus disorder prediction 134 148 - -
Stsc91588g00001 682 FunFam Probable lysine-specific demethylase ELF6 646 675 - -
Stsc91588g00001 682 MobiDBLite consensus disorder prediction 33 558 - -
Stsc91588g00001 682 MobiDBLite consensus disorder prediction 496 540 - -
Stsc91588g00001 682 Coils Coil 545 565 - -
Stsc91588g00001 682 MobiDBLite consensus disorder prediction 219 244 - -
Stsc91588g00001 682 MobiDBLite consensus disorder prediction 313 332 - -
Stsc91588g00001 682 MobiDBLite consensus disorder prediction 342 396 - -
Stsc91588g00001 682 MobiDBLite consensus disorder prediction 149 188 - -
Stsc91588g00001 682 PANTHER ZINC FINGER PROTEIN ZIC AND GLI 224 674 - -
Stsc91588g00001 682 MobiDBLite consensus disorder prediction 35 117 - -
Stsc91588g00001 682 SUPERFAMILY beta-beta-alpha zinc fingers 589 625 IPR036236 -
Stsc91588g00001 682 ProSitePatterns Zinc finger C2H2 type domain signature. 621 643 IPR013087 -
Stsc91588g00001 682 ProSiteProfiles Zinc finger C2H2 type domain profile. 589 618 IPR013087 -
Stsc91588g00001 682 MobiDBLite consensus disorder prediction 291 305 - -
Stsc91588g00001 682 ProSiteProfiles Zinc finger C2H2 type domain profile. 619 648 IPR013087 -
Stsc91588g00001 682 Gene3D Classic Zinc Finger 534 588 - -
Stsc91588g00001 682 ProSitePatterns Zinc finger C2H2 type domain signature. 591 613 IPR013087 -
Stsc91588g00001 682 FunFam Probable lysine-specific demethylase ELF6 616 645 - -
Stsc91588g00001 682 Gene3D Classic Zinc Finger 589 674 - -
Stsc91588g00001 682 SMART c2h2final6 566 588 IPR013087 -
Stsc91588g00001 682 SMART c2h2final6 619 643 IPR013087 -
Stsc91588g00001 682 SMART c2h2final6 649 675 IPR013087 -
Stsc91588g00001 682 SMART c2h2final6 589 613 IPR013087 -
Stsc91588g00001 682 SUPERFAMILY beta-beta-alpha zinc fingers 630 673 IPR036236 -
Stsc91588g00001 682 MobiDBLite consensus disorder prediction 252 271 - -
Stsc91588g00001 682 ProSiteProfiles Zinc finger C2H2 type domain profile. 649 680 IPR013087 -
Stsc91588g00001 682 MobiDBLite consensus disorder prediction 447 481 - -
Stsc91588g00001 682 ProSitePatterns Zinc finger C2H2 type domain signature. 651 675 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc91588g00001 Stsc-Chr91588 1 2467 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc91588g00001 302 680 C2H2 Transcription Factor Family AT3G48430 39.905 4.13e-77 264
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Stsc91588g00001 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc91588g00001 - - aip:107632400 1167.53