Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc91581g00001 ATGGCTCTTACACTTCAATGTGCTCTCTCTCACATACTCAGTTTTGTAGTGTTCCTCTCAATATTCCTAGTGAACCCTTCCTTCTGCTTCAACCCCAAAAAACTTGTGAATGCTTCATTCTCATACTCCCCATCTGGTTCGGATTGGTCACCTGCACTTGCCACTTGGTATGGACCTCCTAAAGGAGACGGAAGTGAAGGTGGTGCTTGTGGATATGGAGCTACTGTTGGCCAAGATCCACTCTCTGCAATGGTATCAGCAGGAAGCCCTCTTTTATATGACAACGGCAAAGGCTGTGGTTCTTGTTACGAGGTGAGGTGCACAGGAAATTCAGCATGCTCAGGGAAGCCTGTGAAGGTAGTGATCACAGATGAGTGCGATGGGTGTGGTTCAGATGCTGAATACCATTTTGATTTGAGTGGCAATGCTTTTGGTGCCATGGCTCTCTTTGGTCAGGATGGCAACCTACGCGATGCTGGCAAAATAACTATTCAGCATAGGAGAGTTGAATGTAACTATCCTGGTGTGTCATTGGCATTCCACGTGGACTCTGGATCGAACCAAGAATATTTCGCTGCGGTGATTGAATATGAGGATGGGGATGGTGACCTTTCAAAAGTTGAACTCAAAGAAGCACTTGACTCAGCCTCATGGTGCACCATGCAACAATCATGGGGTGCTGTTTGGAAGCTTGACAAAGGATCACCACTCAGAGCACCTTTCTCTCTCAGGCTAACCACACTTGAGTCCGGCAACTCCATTGTGGCAAACAATGTCATCCCTGCTGGCTGGGTTCCTGGTCACACCTACAGATCAATTGTGAACTTTCAAACCTAG 837 0.4719 MALTLQCALSHILSFVVFLSIFLVNPSFCFNPKKLVNASFSYSPSGSDWSPALATWYGPPKGDGSEGGACGYGATVGQDPLSAMVSAGSPLLYDNGKGCGSCYEVRCTGNSACSGKPVKVVITDECDGCGSDAEYHFDLSGNAFGAMALFGQDGNLRDAGKITIQHRRVECNYPGVSLAFHVDSGSNQEYFAAVIEYEDGDGDLSKVELKEALDSASWCTMQQSWGAVWKLDKGSPLRAPFSLRLTTLESGNSIVANNVIPAGWVPGHTYRSIVNFQT 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc91581g00001 278 SUPERFAMILY PHL pollen allergen 178 272 IPR036749 -
Stsc91581g00001 278 PRINTS Expansin/Lol pI family signature 89 107 IPR007118 GO:0005576
Stsc91581g00001 278 PRINTS Expansin/Lol pI family signature 48 63 IPR007118 GO:0005576
Stsc91581g00001 278 PRINTS Expansin/Lol pI family signature 218 232 IPR007118 GO:0005576
Stsc91581g00001 278 PRINTS Expansin/Lol pI family signature 159 175 IPR007118 GO:0005576
Stsc91581g00001 278 PRINTS Expansin/Lol pI family signature 258 272 IPR007118 GO:0005576
Stsc91581g00001 278 PRINTS Expansin/Lol pI family signature 66 84 IPR007118 GO:0005576
Stsc91581g00001 278 PANTHER EXPANSIN-B3 23 276 - -
Stsc91581g00001 278 PRINTS Major pollen allergen Lol pI signature 180 195 IPR005795 GO:0005576|GO:0019953
Stsc91581g00001 278 PRINTS Major pollen allergen Lol pI signature 227 244 IPR005795 GO:0005576|GO:0019953
Stsc91581g00001 278 PRINTS Major pollen allergen Lol pI signature 148 163 IPR005795 GO:0005576|GO:0019953
Stsc91581g00001 278 PRINTS Major pollen allergen Lol pI signature 107 117 IPR005795 GO:0005576|GO:0019953
Stsc91581g00001 278 PRINTS Major pollen allergen Lol pI signature 87 98 IPR005795 GO:0005576|GO:0019953
Stsc91581g00001 278 PRINTS Major pollen allergen Lol pI signature 196 211 IPR005795 GO:0005576|GO:0019953
Stsc91581g00001 278 CDD DPBB_EXPB_N 49 171 - -
Stsc91581g00001 278 Pfam Expansin C-terminal domain 179 261 IPR007117 -
Stsc91581g00001 278 SUPERFAMILY Barwin-like endoglucanases 39 175 IPR036908 -
Stsc91581g00001 278 SMART dpbb_1 85 166 IPR007112 -
Stsc91581g00001 278 Pfam Lytic transglycolase 86 162 IPR009009 -
Stsc91581g00001 278 Gene3D - 173 277 IPR036749 -
Stsc91581g00001 278 Gene3D - 32 172 IPR036908 -
Stsc91581g00001 278 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 67 176 IPR007112 -
Stsc91581g00001 278 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 189 272 IPR007117 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc91581g00001 Stsc-Chr91581 13635 16936 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc91581g00001 25 276 Expansin Gene Family AT1G65680 59.524 1.54e-106 308
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc91581g00001 - - gmx:548090 483.026