Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc91575g00001 ATGTCCACCACCTCAAGAGACCAAGCCACTTCACATGCCTCTCACATGCACTTCTATACCGCCACTACCGACAGCGAAGAACAACACTATGACCAAAACAACATCGTCACAGACGACGATGACAGCGACCTTGATGATGAGCAGCAGCACAACCCCAACTATGGCGAAGATAAAACAGAATTAGCCGAAAGATCCCGCCGCAGCAGGTGGAGCTGGTGGTGGCCAACGGCTAAAGTTCTGGACCCGAGGTCGAGATGGGTCCAAGAATGGAACAGAGTTTTTCTTTTGGTGTGCGCCACGGGTCTGTTCGTGGACCCGCTATTCTTCTACGTGCTCTCTGTGAGTGACACGTGTATGTGCCTCTTCGTGGATGGTTGGTTCGCCGTGACGGTAACGGTTTTGCGGTGCATGACGGATGCACTGCACGTGTGGAACATGTGGCTGCAGCTCAAGATGGCAAAGAGGACTTTTGGTTTGGGTGCTGCCGCGGCGGCAGGTGGTTGTGGCAGTGGCGGAGGGGGGCTGAGGGATACTAACCCCCGTTCTGTAGCTTTTGGGTATCTCAAGGCTAAGACTGGATTCTTCTTTGATATCTTTGTTATTCTTCCAATACCTCAGATTGTGCTGTGGGTGGGAATCCCATCAGTGTTAGAGAAAGGGTCAGTGACAGTGGTGATGACAGTGTTGCTGATAATGTTTCTGTTGCAATACCTTCCGAAAATATATCACGCAGTTTGCCATCTGAGAAGAATGCAGAACCTTTCTGGCTACATTTTTGGAACCGTTTGGTGGGGTATTGCTCTTAACATGATTGCCTATTTTGTCGCCTCTCATGCAGCAGGGGCATGTTGGTACTTGTTGGGGATTCAGAGAGCAGCAAAGTGCCTCAAAGAACAGTGTGCAAAAACAGATGGTTGTGGGTTAAGGATTCTTTCATGCAAAGAACCAATATACTATGGAAGCACAAGAAGCTTGGTTAGTGACAGAGCAAGGTTAGCATGGGCAGGGAGCAAGGAAGCAAGGTCCATTTGCTTAGATGGACCTGACAACTATAACTATGGTGCTTATCGGTGGACTGTTCAACTTGTCACCAATGATAATCGATTGGAAAAGATTCTTTTCCCTATCTTCTGGGGCCTCATGACTCTCAGCACTTTTGGTAACCTGGAGAGCACAACAGAATGGCTAGAAGTAGTTTTTAACATCATTAGCTTGACCAGTGGTCTTCTTCTTGTCACCATGTTAATTGGAAACATCAAGGTGTTTTTGCATGCAACAACATCAAAAAAGCAAGCGATGCAACTGAAGATGAGGAACATTGAATGGTGGATGAGGAAGAGGCGGTTGCCGCAAGGGTTTCGGCAGAGAGTGCGAACGTATGAACGACAGCGTTGGGCCGCCATGCGTGGCGTTGATGAGTGTGAGATGACCAGAAATTTGCCCGAAGGGCTAAGAAGAGACATAAAATATCATCTTTGTTTGGATTTGGTCAAGCAGGTACCACTATTTCAGCATATGGATGAACTTGTCCTAGAGAACATTTGTGACCGCGTGAAGTCTCTCATATTCACAAAGGGAGAAACAATAGCCAAAGAGGGAGACCCAGTTCAAAGAATGCTATTTGTAGTAAGGGGTCACCTTCAAAGCAGCCAAGTTCTAAGAGATGGTGTAGAAAGTTGTTGCATGTTAGGTCCCGGAAACTTCAGCGGAGACGAGCTCCTTTCGTGGTGTTTAAGGAGACCCTTCATAGAGCGCCTTCCGCCGTCTTCATCGACTCTTGTAACACTCGAAACCACCGAGGCATTCGGTCTAGAAGCAGAGGATGTGAAGTATGTTACCCAGCACTTTAGGTACACTTTCGTGAAGGAAAAAGTGAAAAGAAGTGCCAGGTATTATTCCCCAGGATGGCGAACATGGGCTGCCGTGGCGATTCAATTGGCTTGGAGGAGGTACAAGCATCGGTTGACTTTGACTTCCTTGTCCTTTATAAGGCCAAGGAGGCCTCTGTCGCGTTCCTCTTCCTTAGGAGAAGACAGGCTTAGGCTCTATACAGCATTGCTAACCTCACCAAAGCCTAATCAGGAAGATTTTGACTTCTGA 2100 0.4771 MSTTSRDQATSHASHMHFYTATTDSEEQHYDQNNIVTDDDDSDLDDEQQHNPNYGEDKTELAERSRRSRWSWWWPTAKVLDPRSRWVQEWNRVFLLVCATGLFVDPLFFYVLSVSDTCMCLFVDGWFAVTVTVLRCMTDALHVWNMWLQLKMAKRTFGLGAAAAAGGCGSGGGGLRDTNPRSVAFGYLKAKTGFFFDIFVILPIPQIVLWVGIPSVLEKGSVTVVMTVLLIMFLLQYLPKIYHAVCHLRRMQNLSGYIFGTVWWGIALNMIAYFVASHAAGACWYLLGIQRAAKCLKEQCAKTDGCGLRILSCKEPIYYGSTRSLVSDRARLAWAGSKEARSICLDGPDNYNYGAYRWTVQLVTNDNRLEKILFPIFWGLMTLSTFGNLESTTEWLEVVFNIISLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKRRLPQGFRQRVRTYERQRWAAMRGVDECEMTRNLPEGLRRDIKYHLCLDLVKQVPLFQHMDELVLENICDRVKSLIFTKGETIAKEGDPVQRMLFVVRGHLQSSQVLRDGVESCCMLGPGNFSGDELLSWCLRRPFIERLPPSSSTLVTLETTEAFGLEAEDVKYVTQHFRYTFVKEKVKRSARYYSPGWRTWAAVAIQLAWRRYKHRLTLTSLSFIRPRRPLSRSSSLGEDRLRLYTALLTSPKPNQEDFDF 699
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc91575g00001 699 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 63 664 - -
Stsc91575g00001 699 FunFam Cyclic nucleotide-gated ion channel 1 429 493 - -
Stsc91575g00001 699 FunFam cyclic nucleotide-gated ion channel 4 500 618 - -
Stsc91575g00001 699 Pfam Ion transport protein 90 419 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Stsc91575g00001 699 MobiDBLite consensus disorder prediction 22 60 - -
Stsc91575g00001 699 SUPERFAMILY cAMP-binding domain-like 428 616 IPR018490 -
Stsc91575g00001 699 Pfam Cyclic nucleotide-binding domain 523 610 IPR000595 -
Stsc91575g00001 699 SUPERFAMILY Voltage-gated potassium channels 81 423 - -
Stsc91575g00001 699 Gene3D Helix hairpin bin 427 493 - -
Stsc91575g00001 699 ProSiteProfiles cAMP/cGMP binding motif profile. 502 612 IPR000595 -
Stsc91575g00001 699 Gene3D Jelly Rolls 500 618 IPR014710 -
Stsc91575g00001 699 CDD CAP_ED 502 608 IPR000595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc91575g00001 Stsc-Chr91575 1030 11442 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc91575g00001 73 698 Ion Channels AT5G54250 80.351 0.0 1027
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc91575g00001 K05391 - gmx:100796761 1129.78