Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc91566g00001 CTAGCGGCTGAGGTTGAACGCGATGAAGATGAGGGTGGAACAGCCGGAGAAACATTTACAGATTATTGGCCAGCAAAAGTAACTATGGGACCTCCGCACCCAGATCCTGTTGTTGAGACTTCTTCCTTGTCTGCGGTGCAGCCACCTGATCCTACTTATGATCCAATACTTAAAGATTATTTGGAAAATTCAAAGGCTTTGTCATGCCTGCAGATAGAGACATTGGTCTATGCTTGTCAGAGGCATCGTCTACGCCTTCCAGACGGCACAAGGGCAGGATTTTTTATTGGAGATGGAGCTGGTGTTGGTAAGGGCCGCACAGTTGCTGGGCTAATTTGGGAGAACTGGCAGCAAGGAAGGGAAAAGGCATTATGGATTTCTGTTGGTTCAGACTTGAAGTTTGATGCCAGAAGAGACTTGGATGATATGGGTGCAACTTGTGTCAAAGTGCATGCTTTGAACAAACTGCCTTATTCTAAGCTTTCTTCGAAGTCTGTTGGAGTCAAGGACGGGGTTATTTTCTTAACCTACAGTAGCCTCATAGCATCCTCTGATAACGGTCAATCTCGTCTCAAACAGCTTGTCCAGTGGTGTGGGCCAAAGTTTGATGGTCTTATAATATTCGATGAGTGTCACAAAGCGAAAAACTTGGTGCCGCCAGCTGAACCCGGTAAGAGGTCAACAAAAAAGTCAACACAAACTGGCAAAGCAGTGCTTGATATACAGGCTCAACTACCTGAAGCTCGTGTTGTTTATTGTTCTGCCACTGGTGCATCTGAATCTCGCAACATGGCTTATATGGTTCGACTTGGCCTTTGGGGTGATGGAACTTCTTTCTGTGATTTCAAAGAATTTTTAGGTGCACTTGATAAAGGGGGTGTTGGAGCTCTAGAACTAGTTGCCATGGACATGAAAGCAAGGGGAATGTATTTATGTCGGACCCTTAGCTACAAGGGTGCTGACTTTGAAGTTATTGAAGCACCATTAGAGGATAGCATGATGGACATGTATGAAAAGGCTGCAAAATTTTGGGCGGAACTGCGTGATGATTTACTGTCCCCAACTTCCGATGTTTTTCTAAATGCAAATCTTGAATCAAATACGCTGTGGTCATTATACTGGGCATGCCACCAGCGTTTCTTTAGACACATGTGTATGTCTGCTAAAGTACCTGCTACTGTGAGACTAGTGAAGCAAGCATTAATGGAAGATAAGTGCGTAGTTATAGGACTGCAGAGTACCGGTGAAGCTAGGACTGGAGGAGCTGTGGCAAAATATGGTTTTGAACTTGATGACTTCATTTCTGGACCTCAAGAGTTGCTGGTAAAATTTATAGACGACTGTTTTCCATTGCCAGAGAACCCAGAACTTCTTCTTGAAAAGGATGAATCGCAGGATCTCCAGGGGAAGGGGTGCTCAACAAGTCCTTGTGTATCAGGAAACGTAAAGGGCAGGAACATAGATAAGGTGCATCCTTCTAGTAATATTGAAAGTGGCGAAGAATCTGAAACTGACACTGATGGTGAAATGGATGAATCTGATTATGAACCAGATGGTGAAGACAGTGCTACCTCTGCCAATGAATCTAGTGACTCTGATTATGCTGAGCTTCAGACATGTGAATTATGCAACCTAGAGGAGGAAAGGCAAAATTTGCTTTCATGTTCTGGCTGTGGTAAACTAGTCCATCAAGAATGCTTAAGCCCCCCAATGCTCAAATTAGTTCCAGAAAAATGGTTATGCACTGTGTGCAAAGGAAGCACAAATGACATTCAAGCAGGTCATGGCTACAACCTAACTGAACTCAAGAAGAGGGATTATTGTGCTAATGAACTTTATTACAGCAGAGTTGCAAGACAGAAGTTTGTCCAACAGAATCTTTTAGGAGGCCCTGAACAAGTTGCTGAAATCACAGGAAGAAAAGGCAGGCTTGTGAAGGCCCCTTCTGGAAAGGGTGTAATTTATGAGCCTCGTAACAAAAAGGATATCAGTATGGAGATGGTAAACATGCATGAAAAGCGTCTTTTTCTGGATGCTAAGAAGTTAGTTGCTATTATATCTGAAGCGGGGTCTGCAGGTGTTTCATTGCATGCAGATAGAAGGGTTATTAATCAGAAAAGAAGGGTTCATATAACTTTAGAACTTCCTTGGAGTGCTGACAAAGCAATTCAACAGTTAGGAAGAACTCATCGATCAAATCAAGCTTCAGCCCCCGAATACAGGGTACTCTTTACTAAGCTTGGTGGTGAACGAAGGTTTGCATCTGCTGTTGCTAAACGATTAGAATCTCTTGGTGCTTTGACCCAGGGGGATCGCAGGGCTGGACCTTCTTTAAGTGCTTATAATTATGATAGTACTTATGGAAAGAAGGCTCTAATGATTATGTACGAAGGAATAATGGAACAGGATTCTTTTCCTATTGTTCCTCCTGGATGTTTATCTGATAATCATGACACTATCAATGACTTTATTATGGAAGCAAAAACTGCTCTTCAATCTGTTGGAATAGTAAAAGGAGATGAACATTTTGACTACATTAGTGATAAAGATATGCAAGATGTTGGGCGATTCCTCAATCGGCTTCTGGGACTTCCTCCTGATATTCAGAATAGGCTTTTTGAATTATTTGCGAGTATATTTGATCATCTCATTCAGCATGCTCGCATTGAAGGTAACCTTGATACAGGCATTGTTGACATGAAAGCTAATGCTGTAGAACTACGAGGGATTCCAAAGACAGTTTACATTGATCCAGTGACTGGGGCTTCGACGGTTCTGTTCACTTTCATCTTGGATAGGGGGACCACGTGGCAGTTGGCAATGTCCATGCTGAATGAGAAGCAGAAGGGTGGGCTTGGATCAGCCAATGATGGTTTCTATGAGTCTAGGAGGGAGTGGTTAGGAAGGCATCATTTCATTTTAGCGTTTGAAAGTTCTGCCTCGAATATGTATAAGACAGTTCGCCCTACTGTTGGAGAATCCCTTCGGGACATGCATTTATTAGAATTGAAAAGGAAATATAAAAAAGTTTCTTCTTTAGAGAAAGCTCAAAAAGGATGGGAAGTGGAATATAATGTTTCATCTAAACAGTGTATGCATGGTCCCAAATGTAAGCTTAGCAAGTTCTGTACTGTTGGCCGAAGTAAGCAGGAAGTAAATATCTTGGGTGGTGCTATTCTTCCACTTTGGCGAGCTGTTGAAAAGGCCCTTTCTAAGCAGGATCGCATAAGCCATAGGAGGCTTCGTATTGTTCGCATTGAAACTTCTGCTGATAACCAGCATATAGTTGGGCTTCTTGTTCCTAATGCAGCCGTTGAATCTGTGCTTCAAGGTTTGGAATGGGTTCCAGCAGATGATAATTGA 3363 0.4267 LAAEVERDEDEGGTAGETFTDYWPAKVTMGPPHPDPVVETSSLSAVQPPDPTYDPILKDYLENSKALSCLQIETLVYACQRHRLRLPDGTRAGFFIGDGAGVGKGRTVAGLIWENWQQGREKALWISVGSDLKFDARRDLDDMGATCVKVHALNKLPYSKLSSKSVGVKDGVIFLTYSSLIASSDNGQSRLKQLVQWCGPKFDGLIIFDECHKAKNLVPPAEPGKRSTKKSTQTGKAVLDIQAQLPEARVVYCSATGASESRNMAYMVRLGLWGDGTSFCDFKEFLGALDKGGVGALELVAMDMKARGMYLCRTLSYKGADFEVIEAPLEDSMMDMYEKAAKFWAELRDDLLSPTSDVFLNANLESNTLWSLYWACHQRFFRHMCMSAKVPATVRLVKQALMEDKCVVIGLQSTGEARTGGAVAKYGFELDDFISGPQELLVKFIDDCFPLPENPELLLEKDESQDLQGKGCSTSPCVSGNVKGRNIDKVHPSSNIESGEESETDTDGEMDESDYEPDGEDSATSANESSDSDYAELQTCELCNLEEERQNLLSCSGCGKLVHQECLSPPMLKLVPEKWLCTVCKGSTNDIQAGHGYNLTELKKRDYCANELYYSRVARQKFVQQNLLGGPEQVAEITGRKGRLVKAPSGKGVIYEPRNKKDISMEMVNMHEKRLFLDAKKLVAIISEAGSAGVSLHADRRVINQKRRVHITLELPWSADKAIQQLGRTHRSNQASAPEYRVLFTKLGGERRFASAVAKRLESLGALTQGDRRAGPSLSAYNYDSTYGKKALMIMYEGIMEQDSFPIVPPGCLSDNHDTINDFIMEAKTALQSVGIVKGDEHFDYISDKDMQDVGRFLNRLLGLPPDIQNRLFELFASIFDHLIQHARIEGNLDTGIVDMKANAVELRGIPKTVYIDPVTGASTVLFTFILDRGTTWQLAMSMLNEKQKGGLGSANDGFYESRREWLGRHHFILAFESSASNMYKTVRPTVGESLRDMHLLELKRKYKKVSSLEKAQKGWEVEYNVSSKQCMHGPKCKLSKFCTVGRSKQEVNILGGAILPLWRAVEKALSKQDRISHRRLRIVRIETSADNQHIVGLLVPNAAVESVLQGLEWVPADDN 1120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc91566g00001 1120 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 27 281 IPR027417 -
Stsc91566g00001 1120 Pfam P-loop containing NTP hydrolase pore-1 32 338 IPR039187 -
Stsc91566g00001 1120 FunFam Protein strawberry notch homolog 2 63 269 - -
Stsc91566g00001 1120 CDD PHD_SF 539 584 - -
Stsc91566g00001 1120 SUPERFAMILY FYVE/PHD zinc finger 528 587 IPR011011 -
Stsc91566g00001 1120 MobiDBLite consensus disorder prediction 483 533 - -
Stsc91566g00001 1120 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 676 779 IPR027417 -
Stsc91566g00001 1120 MobiDBLite consensus disorder prediction 500 521 - -
Stsc91566g00001 1120 MobiDBLite consensus disorder prediction 1 46 - -
Stsc91566g00001 1120 Pfam C-terminal domain on Strawberry notch homologue 627 899 IPR026937 -
Stsc91566g00001 1120 ProSitePatterns Zinc finger PHD-type signature. 540 584 IPR019786 -
Stsc91566g00001 1120 Gene3D - 57 270 IPR027417 -
Stsc91566g00001 1120 ProSiteProfiles Zinc finger PHD-type profile. 537 587 IPR019787 -
Stsc91566g00001 1120 PANTHER STRAWBERRY NOTCH-RELATED 6 1115 IPR026741 GO:0006355
Stsc91566g00001 1120 Pfam PHD-finger 540 585 IPR019787 -
Stsc91566g00001 1120 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 500 590 IPR013083 -
Stsc91566g00001 1120 SMART PHD_3 539 585 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc91566g00001 Stsc-Chr91566 7881 22728 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Stsc91566g00001 AAA_34 1.6e-130 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc91566g00001 K26273 - gmx:100808670 1569.29