Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc91565g00003 ATGGCACTCACTTTCATGTTGATGCTTCTCCTTGGAAACTTCACTACTATGGCCGCCTCTACTCCTATCACTTGTGGTTCCCGAGGCGCATCACCAGACTGCTTCAAGGAACCTTCTGATGAGTTCGCGGGTTCTGTCAGCCAAATTATTGGCCTCTTGAAAGATATTGTTTCCATCTTGTCCAAGTTTAGGGGTGTCACTGCTGGTAATTTGCATCTCAACAACGCCATTCTTGACTCTCTTGAATTGTTGGACTTGTCCTCGGATGAGCTAGGCTCCTCTGTCTCCGCCATTCAAAACTCCAAAGGGAGAAACAACAGCACACAAAATGCTTTATTAGGATCCAATTTGACGACATGGCTAAGTGCTGTCCTAGCAAATCTAGACACAATCGTCGATGGATTCGAAGGCACAACAAGTATCATCGCAGGTTTAATCTCCACCGGACTTAGACAAGTGACATCACTAGTGAAGAATCTCCTCGCAGGAATTGATAACCCCAAGAATGATTTCTTCGACAGTGTCGGAGAGGGTCGGCGGTTTCCTTCGTGGGTGAAGCCGGAGGAGAGGAATCTTCTGGAAGCACATGGAGTGACTCCGGATGTTGTGGTGGCCGCAGATGGAACTGGAAATTTCACAAGGGTGACGGATGCGGTTTTGGCTGCACCAGAAAAGAGCGAAAAGAGGTTTGTGATTTACGTGAAGAGAGGTGTTTACAATGAGTACGTGGAGATTCAGAAGAATAAGTGGAATATCGTGATGATCGGAGATGGTATCGGTGCCACTGTTATCACCGGTAACCGGAATTATGTCGACGGCTTTACCACTTTTCGAACGGCTACCTTTGCAGTGGTTGGAAGAGGGTTCATAGCACGAGACATTACTTTCAAGAACACAGCAGGGCCAGAAAAGAAACAAGCAGTAGCACTAAGAACCGATTCCGACCTCTCCATCTACTTCCGTTGCGAAATCACCGGCTATCAAGACAGCCTCTACACTCACTCAATGCGGCAATTCTTCAGAGAGTGCACAATTTCCGGCACCGTCGATTTCATCTTTGGCTACGCAACCGCATTCTTCCAAAAATGCAATATACTTGTCAAGAAAGGGTTACCAAAACAAAGGAATGCAATCACTGCACAAGGTAGAAAAGATCCTCATGAAACAACAGGATTCTCCTTGCAATTCTGCAACATAACCGCTGATTCCGATCTCGTTCCGTTTGTTAACACCACGGAATCTTTCTTGGGGAGGCCGTGGAAACCGTATTCAAGAACGATTTTTCTGCAAAATTATATAAGCGACGTTATAAGCCCACTAGGTTGGACACCATGGAATGATAGCAACTTTTGGTTGGACACATTGTATTATGCTGAGTATATGAACACCGGTGCCGGTGCCGGACTAGATAAAAGAGTGAAATGGCCTGGATACCGTGTTTTGAAAAGCTCCGATGAAGCTAGTAATTTTACGGTGGCGAAGTTCATTGAAGGGAATTTATGGTTGCCTTCAACTGGTGTAGCATTTACCGCTGGATTTGAAAATGAAGTTGTAGTTTAA 1560 0.4551 MALTFMLMLLLGNFTTMAASTPITCGSRGASPDCFKEPSDEFAGSVSQIIGLLKDIVSILSKFRGVTAGNLHLNNAILDSLELLDLSSDELGSSVSAIQNSKGRNNSTQNALLGSNLTTWLSAVLANLDTIVDGFEGTTSIIAGLISTGLRQVTSLVKNLLAGIDNPKNDFFDSVGEGRRFPSWVKPEERNLLEAHGVTPDVVVAADGTGNFTRVTDAVLAAPEKSEKRFVIYVKRGVYNEYVEIQKNKWNIVMIGDGIGATVITGNRNYVDGFTTFRTATFAVVGRGFIARDITFKNTAGPEKKQAVALRTDSDLSIYFRCEITGYQDSLYTHSMRQFFRECTISGTVDFIFGYATAFFQKCNILVKKGLPKQRNAITAQGRKDPHETTGFSLQFCNITADSDLVPFVNTTESFLGRPWKPYSRTIFLQNYISDVISPLGWTPWNDSNFWLDTLYYAEYMNTGAGAGLDKRVKWPGYRVLKSSDEASNFTVAKFIEGNLWLPSTGVAFTAGFENEVVV 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc91565g00003 519 ProSitePatterns Pectinesterase signature 1. 226 245 IPR018040 -
Stsc91565g00003 519 Gene3D Invertase/pectin methylesterase inhibitor family protein 32 166 IPR035513 -
Stsc91565g00003 519 PANTHER PECTINESTERASE 22 503 - -
Stsc91565g00003 519 SMART PMEI_2 38 163 IPR006501 GO:0004857
Stsc91565g00003 519 Pfam Plant invertase/pectin methylesterase inhibitor 72 162 IPR006501 GO:0004857
Stsc91565g00003 519 SUPERFAMILY Pectin lyase-like 198 512 IPR011050 -
Stsc91565g00003 519 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 45 162 IPR035513 -
Stsc91565g00003 519 Gene3D - 195 513 IPR012334 -
Stsc91565g00003 519 FunFam Pectinesterase 195 513 - -
Stsc91565g00003 519 Pfam Pectinesterase 201 499 IPR000070 GO:0030599|GO:0042545
Stsc91565g00003 519 ProSitePatterns Pectinesterase signature 2. 345 354 IPR033131 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc91565g00003 Stsc-Chr91565 15364 17710 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc91565g00003 33 513 Carbohydrate Esterase AT3G43270 58.740 0.0 593
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc91565g00003 K01051 - gmx:100814987 609.757