Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc91554g00008 ATGCAAATTCAAATGCAAATGCAGGAGGAGCAGATCAAGAGCCTGAAGGATGAGAATGCGCCGCCGGGGGATACGGTGGTTAGGTGGGAGAAGTTTCTCCCTCGGATGGCGCTCAGAGTGTTGCTTGTTGAAGCCGATGATTCCACTCGCCAGATCATCTCCGCTCTTCTCCGAAAATGCAGTTACAAAGTTGCTGCAGTTCCTGACGGCCTAAAGGCATGGGAGACATTGAAGAGCAAAGCACCTGAGATTGATCTTATATTAACAGAAGTGGAGTTGCCATCCATATCTGGATTTTCACTTCTCACTTTGATAATGGAACATGACATTTGCAAAAGCATTCCCGTCATAATGATGTCCACTAATGATTCAGTTAGCATGGTGTTCACATGCATGTTGAAAGGTGCGGCTGATTTTCTTATTAAACCCATTCGGAGGAATGAGCTACGGAACTTGTGGCAGCACGTATGGAGAAGGCATGCTATTAGCGGGTCCCATCCGAGTTTAACATTGCTGCAGAATAAACTTGAAATTGCTGCTGAAAACAATGCTGCAAGCAATGACTCTAGTGGTTCTGTGGCTTCCCCCCAGAAAAATAATGAGTACAGTGGTGAGAAAGCAAGTGACGCTCAAGTTACCTCCCCGCTGAAGAGCTCTTCAAAGTTGAGCGATATTAACCCAGTGAAGCATGAAGAGGCTACCCAATTTGAAAGGGAATCGGCTACACACCATAACGAAGCTGGAGAGAAATCAATTATGTTTGTATCAGATGCTACAAGGTGCAACAAAACTCTTAATGCGACAGGTGTAAGGCTAAATCAAGGCTTTGATTGTGATGAAACAGAAAATGAAGATGGAGTCTTAAGAACAGAATTAAGCAAAGCCAATCCTCATATTAATACCAAGATTAATGAATGCAGTGATGAACTGGTAGAACCTTCTAGAGGGGCTATTGACTTGATTGCTACATTTGAGAATCTTCCGAAGAGCACAGGTGAAAATTGTAGTATCTATGCTGATAACACAGCCAAGTCGGTTTTTGATACACAATTGGGACTTTCTTTAAGAAGAGATTTTCCTAGTAGCTCATGTAAGCCTGCAATGGAAGAAAGGCAAATATTGAACCATTCAACTGCGTCGGCCTTTTCTTGGTATAGCAGTAGTAAGTTGTTGCAGCCCCTTTTTCCATCTCAATCAGTTACTTCTGCTAAATTATCAAGTGCCAGTTGTAATTCTCATGAGTCCCATAAGTCATCTGAAAATACAGATACTCATCAACAGCATGGTGATAAAATTCAAAATAAACAGAACATGACCACTTTGGTCACTCAGACTGACCAAATTGAACCAAAATCACCAAACAATCAACTTGGATTCTTTTGTGCTATTGGGGTTTCTTCTGATCATAACTCTACGGGACATGGCAATGCTTTCCCTTGTATGACCGGTGCACAATCAGCTGTGCATCCCGTATGGACTCCGAAACCAGTGTCCCAGAAAGAAAATTCTCCATTTCCCACTAGTGCTTCTTCCCATTCCAACCCTGAAACTGACAATTCAGAACGTCATCGATGGTCAGATGATGCCACCAACGCTTCTGATCAAAATGTAAATGATGAAAGCAAGTTGGATTGTGTTAGGCATGACTCTGCTGCTGCTGGTCAGAGTGCAAGTACTAGTTTTTACCTTGAAAATCATAATAGTAGCGGTGCCTATGGAAGTATAGGCAGTGGAAGTGATGCAAATGCTACTTCAGCTGTGGTAACTAAGAACAACCCAGAAAGTTTTGCTGATAGTAGTCAACATAGTCATGATGGATTCAGAGGGATGGATTCTCATCGGAGCAGCCAAAGGGAAGCAGCTCTAACAAAGTTTCGGCTGAAGAGGAAGGAGAGATGCTACGAGAAGAAGGTACTTCAACAATGCTGTGACTGCTTGTAA 1941 0.4276 MQIQMQMQEEQIKSLKDENAPPGDTVVRWEKFLPRMALRVLLVEADDSTRQIISALLRKCSYKVAAVPDGLKAWETLKSKAPEIDLILTEVELPSISGFSLLTLIMEHDICKSIPVIMMSTNDSVSMVFTCMLKGAADFLIKPIRRNELRNLWQHVWRRHAISGSHPSLTLLQNKLEIAAENNAASNDSSGSVASPQKNNEYSGEKASDAQVTSPLKSSSKLSDINPVKHEEATQFERESATHHNEAGEKSIMFVSDATRCNKTLNATGVRLNQGFDCDETENEDGVLRTELSKANPHINTKINECSDELVEPSRGAIDLIATFENLPKSTGENCSIYADNTAKSVFDTQLGLSLRRDFPSSSCKPAMEERQILNHSTASAFSWYSSSKLLQPLFPSQSVTSAKLSSASCNSHESHKSSENTDTHQQHGDKIQNKQNMTTLVTQTDQIEPKSPNNQLGFFCAIGVSSDHNSTGHGNAFPCMTGAQSAVHPVWTPKPVSQKENSPFPTSASSHSNPETDNSERHRWSDDATNASDQNVNDESKLDCVRHDSAAAGQSASTSFYLENHNSSGAYGSIGSGSDANATSAVVTKNNPESFADSSQHSHDGFRGMDSHRSSQREAALTKFRLKRKERCYEKKVLQQCCDCL 646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc91554g00008 646 MobiDBLite consensus disorder prediction 183 227 - -
Stsc91554g00008 646 MobiDBLite consensus disorder prediction 496 515 - -
Stsc91554g00008 646 Pfam Response regulator receiver domain 40 151 IPR001789 GO:0000160
Stsc91554g00008 646 MobiDBLite consensus disorder prediction 494 541 - -
Stsc91554g00008 646 SMART REC_2 38 153 IPR001789 GO:0000160
Stsc91554g00008 646 ProSiteProfiles Response regulatory domain profile. 39 157 IPR001789 GO:0000160
Stsc91554g00008 646 MobiDBLite consensus disorder prediction 406 434 - -
Stsc91554g00008 646 Gene3D - 36 274 - -
Stsc91554g00008 646 PANTHER TWO-COMPONENT RESPONSE REGULATOR 38 409 IPR045279 GO:0009736
Stsc91554g00008 646 MobiDBLite consensus disorder prediction 416 430 - -
Stsc91554g00008 646 SUPERFAMILY CheY-like 32 164 IPR011006 -
Stsc91554g00008 646 MobiDBLite consensus disorder prediction 183 223 - -
Stsc91554g00008 646 MobiDBLite consensus disorder prediction 595 617 - -
Stsc91554g00008 646 MobiDBLite consensus disorder prediction 232 246 - -
Stsc91554g00008 646 MobiDBLite consensus disorder prediction 232 251 - -
Stsc91554g00008 646 CDD psREC_PRR 40 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc91554g00008 Stsc-Chr91554 16378 21700 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc91554g00008 613 638 Response Regulator Gene Family AT5G24470 80.769 2.96e-06 48.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Stsc91554g00008 Response_reg 5.1e-21 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc91554g00008 K12130 - gmx:100779346 783.097