Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc91554g00007 ATGCAAATTCAAATGCAAATGCAGGAGGAGCAGATCAAGAGCCTGAAGGATGAGAATGCGCCGCCGGGGGATACGGTGGTTAGGTGGGAGAAGTTTCTCCCTCGGATGGCGCTCAGAGTGTTGCTTGTTGAAGCCGATGATTCCACTCGCCAGATCATCTCCGCTCTTCTCCGAAAATGCAGTTACAAAGTTGCTGCAGTTCCTGACGGCCTAAAGGCATGGGAGACATTGAAGAGCAAAGCACCTGAGATTGATCTTATATTAACAGAAGTGGAGTTGCCATCCATATCTGGATTTTCACTTCTCACTTTGATAATGGAACATGACATTTGCAAAAGCATTCCCGTCATAATGATGTCCACTAATGATTCAGTTAGCATGGTGTTCACATGCATGTTGAAAGGTGCGGCTGATTTTCTTATTAAACCCATTCGGAGGAATGAGCTACGGAACTTGTGGCAGCACGTATGGAGAAGGCATGCTATTAGCGGGTCCCATCCGAGTTTAACATTGCTGCAGAATAAACTTGAAATTGCTGCTGAAAACAATGCTGCAAGCAATGACTCTAGTGGTTCTGTGGCTTCCCCCCAGAAAAATAATGAGTACAGTGGTGAGAAAGCAAGTGACGCTCAAGTTACCTCCCCGCTGAAGAGCTCTTCAAAGTTGAGCGATATTAACCCAGTGAAGCATGAAGAGGCTACCCAATTTGAAAGGGAATCGGCTACACACCATAACGAAGCTGGAGAGAAATCAATTATGTTTGTATCAGATGCTACAAGGTGCAACAAAACTCTTAATGCGACAGGTGTAAGGCTAAATCAAGGCTTTGATTGTGATGAAACAGAAAATGAAGATGGAGTCTTAAGAACAGAATTAAGCAAAGCCAATCCTCATATTAATACCAAGATTAATGAATGCAGTGATGAACTGGTAGAACCTTCTAGAGGGGCTATTGACTTGATTGCTACATTTGAGAATCTTCCGAAGAGCACAGGTGAAAATTGTAGTATCTATGCTGATAACACAGCCAAGTCGGTTTTTGATACACAATTGGGACTTTCTTTAAGAAGAGATTTTCCTAGTAGCTCATGTAAGCCTGCAATGGAAGAAAGGCAAATATTGAACCATTCAACTGCGTCGGCCTTTTCTTGGTATAGCAGTAGTAAGTTGTTGCAGCCCCTTTTTCCATCTCAATCAGTTACTTCTGCTAAATTATCAAGTGCCAGTTGTAATTCTCATGAGTCCCATAAGTCATCTGAAAATACAGATACTCATCAACAGCATGGTGATAAAATTCAAAATAAACAGAACATGACCACTTTGGTCACTCAGACTGACCAAATTGAACCAAAATCACCAAACAATCAACTTGGATTCTTTTGTGCTATTGGGGTTTCTTCTGATCATAACTCTACGGGACATGGCAATGCTTTCCCTTGTATGACCGGTGCACAATCAGCTGTGCATCCCGTATGGACTCCGAAACCAGTGTCCCAGAAAGAAAATTCTCCATTTCCCACTAGTGCTTCTTCCCATTCCAACCCTGAAACTGACAATTCAGAACGTCATCGATGGTCAGATGATGCCACCAACGCTTCTGATCAAAATGTAAATGATGAAAGCAAGTTGGATTGTGTTAGGCATGACTCTGCTGCTGCTGGTCAGAGTGCAAGTACTAGTTTTTACCTTGAAAATCATAATAGTAGCGGTGCCTATGGAAGTATAGGCAGTGGAAGTGATGCAAATGCTACTTCAGCTGTGGTAACTAAGAACAACCCAGAAAGTTTTGCTGATAGTAGTCAACATAGTCATGATGGATTCAGAGGGATGGATTCTCATCGGAGCAGCCAAAGGGAAGCAGCTCTAACAAAGTTTCGGCTGAAGAGGAAGGAGAGATGCTACGAGAAGAAGGTTCGATATCAGAGCCGGAAAAGACTGGCAGAGCAGCGCCCTAGGGTGAAAGGGCAGTTCGTTCGCCAAGTACAAAACGATAATCCAGTAGCAGGTGTAGGTGGTTCCTGA 2022 0.4332 MQIQMQMQEEQIKSLKDENAPPGDTVVRWEKFLPRMALRVLLVEADDSTRQIISALLRKCSYKVAAVPDGLKAWETLKSKAPEIDLILTEVELPSISGFSLLTLIMEHDICKSIPVIMMSTNDSVSMVFTCMLKGAADFLIKPIRRNELRNLWQHVWRRHAISGSHPSLTLLQNKLEIAAENNAASNDSSGSVASPQKNNEYSGEKASDAQVTSPLKSSSKLSDINPVKHEEATQFERESATHHNEAGEKSIMFVSDATRCNKTLNATGVRLNQGFDCDETENEDGVLRTELSKANPHINTKINECSDELVEPSRGAIDLIATFENLPKSTGENCSIYADNTAKSVFDTQLGLSLRRDFPSSSCKPAMEERQILNHSTASAFSWYSSSKLLQPLFPSQSVTSAKLSSASCNSHESHKSSENTDTHQQHGDKIQNKQNMTTLVTQTDQIEPKSPNNQLGFFCAIGVSSDHNSTGHGNAFPCMTGAQSAVHPVWTPKPVSQKENSPFPTSASSHSNPETDNSERHRWSDDATNASDQNVNDESKLDCVRHDSAAAGQSASTSFYLENHNSSGAYGSIGSGSDANATSAVVTKNNPESFADSSQHSHDGFRGMDSHRSSQREAALTKFRLKRKERCYEKKVRYQSRKRLAEQRPRVKGQFVRQVQNDNPVAGVGGS 673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc91554g00007 673 MobiDBLite consensus disorder prediction 183 227 - -
Stsc91554g00007 673 MobiDBLite consensus disorder prediction 496 515 - -
Stsc91554g00007 673 Pfam Response regulator receiver domain 40 151 IPR001789 GO:0000160
Stsc91554g00007 673 PANTHER TWO-COMPONENT RESPONSE REGULATOR 38 406 IPR045279 GO:0009736
Stsc91554g00007 673 MobiDBLite consensus disorder prediction 494 541 - -
Stsc91554g00007 673 SMART REC_2 38 153 IPR001789 GO:0000160
Stsc91554g00007 673 ProSiteProfiles Response regulatory domain profile. 39 157 IPR001789 GO:0000160
Stsc91554g00007 673 MobiDBLite consensus disorder prediction 406 434 - -
Stsc91554g00007 673 Pfam CCT motif 618 660 IPR010402 GO:0005515
Stsc91554g00007 673 MobiDBLite consensus disorder prediction 416 430 - -
Stsc91554g00007 673 ProSiteProfiles CCT domain profile. 618 660 IPR010402 GO:0005515
Stsc91554g00007 673 MobiDBLite consensus disorder prediction 595 624 - -
Stsc91554g00007 673 MobiDBLite consensus disorder prediction 232 246 - -
Stsc91554g00007 673 MobiDBLite consensus disorder prediction 183 223 - -
Stsc91554g00007 673 MobiDBLite consensus disorder prediction 232 251 - -
Stsc91554g00007 673 MobiDBLite consensus disorder prediction 604 624 - -
Stsc91554g00007 673 CDD psREC_PRR 40 143 - -
Stsc91554g00007 673 Gene3D - 36 274 - -
Stsc91554g00007 673 SUPERFAMILY CheY-like 32 164 IPR011006 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc91554g00007 Stsc-Chr91554 16378 21700 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc91554g00007 613 662 Response Regulator Gene Family AT5G24470 84.000 9.84e-21 94.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Stsc91554g00007 Response_reg 5.4e-21 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc91554g00007 K12130 - gmx:100779346 843.188