Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc91554g00005 ATGGAAGCACAAAGCCTTCGCCATTCAGAAGTTATTGAAATCAGTGGTGGAGGAGGAAGTAGTAAGATTTGTGGGGAAGCAGCATGTGGTTTCTCCAAGGATTCAGAAGAGAGATCAGCTTCGATGCGAAAGCTTGTCATAGCAGTGGTGCTTTGTGTTATTTTCATGAGCGTTGAGGTTGTTGGAGGGATCAAAGCAAACAGTCTGGCCATACTAACTGATGCAGCACATTTGCTTTCAGATGTTGCAGCATTTGCCATCTCTTTGTTTTCTTTATGGGCTTCTGGATGGGAAGCCAATCCTCGCCAGTCATACGGCTTTTTCAGGATTGAGATTCTCGGTGCACTTCTTTCCATCCAGTTGATATGGTTGCTTGCTGGGATTCTCGTCTATGAAGCCATTCAAAGAATCATTTCCGGGACTCGCGAGGTCAATGGCTTCTTAATGTTCCTTGTTGCTGCATTTGGTCTAGTTGTTAACATCATTATGGCTCTCTTATTGGGTCATAGCCATAACCACAGCCATGGACATAGTACTCATCATGATCATAATCATCACAACACAAAGCATACAAGAGAGTTCCACCATGTAGAAGATGATGATGAGGACGATGCTACTACTGTGTTTCTTGGGGAATCTAAGAATGTGAATGTGCAGGGAGCTTATCTGCATGTACTTGGGGATTCTGTTCAGAGTGTGGGGGTAATGATTGGTGGAGCAATCATATGGTGGAAGCCGGAGTGGCATATAGTTGATTTAATTTGCACTTTAATCTTTTCAGTAATTGTTTTGGGGACAACTGTAAACATGCTCCGGAACATACTAGAAGTTCTGATGGAGAGCACGCCGCGTGAGATAGACGCGGCGGAGCTCCAAAGGGGGCTGCTGGAAATGGAGGAGGTGTTGGCTGTTCATGAGTTGCATGTTTGGGCTATTACTGTTGGGAAGGTTTTGATGGCTTGCCATGTTATAGTTAGGCCTGAAGTGAATGCAGACATGGTGCTGGACAAGTTGTTCGGTGAGCACCTAGAAGTGAATAATTGCTTGGAACAAGGCTTTGTTGATAGAGAGAGGAACTTCAAACTCAAGGAGGATGAACAACAAACTTTGATATCAAGCTTGGAGGGTAACATGCCATTCCTGCAGATGCTTCAGAGCGTGGACTATTCACCTCCCATTTTTCCCTTCAAAGATCCAAACTTTCAGGCACTGTTAAGACCGCAGCATCTGAAGAAACCATGGGAAGGGATGCCCTACGTACCCACATTGGAATCCGAAATGAATGAACTTGAACAACACACAGAGTCCCAGCATAAAGATAGCAGGTTATCGAAACATGAAAGGGTGAGGAAGAGGAAGAGAGGAAGAGAGAGCAAAGACAAGGACAAGGAAGAGGTTGAGAACCAGCGCATGACCCACATTGCTGTGGAACGCAATAGGCGGCGCCAAATGAACGAGCATCTCACTGTTCTGAAATCTCTCATGCACCCTTCCTATATTCAAAGGGGTGACCATGCATCAATCATAGGGGGTGCAATAGACTTTGTGAAGGAATTGGAGCAGTTAGTTGAATCCCTTGAGGCCCAAAGAAGGATGAGAAACAAGGAAGAAGAGGATGGTGGGATGAGAGAGGAAGCAAGTAGTGGTGGGAATGAGGCGAAGGCAGAGAGATGGTCAAAGGTGGGAGGGATAGAGGTGAGTGTGATTCAAAGGCATGTCAACTTGAGAATTCAGTGCGAGAGGAGAGCAGGGATATTGATAAATGCAATCGTTGCATTGGAGAACCTAAGCCTCACTATTCTGCATCTCAACATCACATCCTCACATTCTTCAGTTCTCTATTCTTTCAGTCTCAAGATTGAAGAAGATAGCAAGTTAGGGTCAGCAAATGAAATTGCAGAGGCAGTTGATAAGACATTGAGCTTCATTAATTAA 1935 0.4486 MEAQSLRHSEVIEISGGGGSSKICGEAACGFSKDSEERSASMRKLVIAVVLCVIFMSVEVVGGIKANSLAILTDAAHLLSDVAAFAISLFSLWASGWEANPRQSYGFFRIEILGALLSIQLIWLLAGILVYEAIQRIISGTREVNGFLMFLVAAFGLVVNIIMALLLGHSHNHSHGHSTHHDHNHHNTKHTREFHHVEDDDEDDATTVFLGESKNVNVQGAYLHVLGDSVQSVGVMIGGAIIWWKPEWHIVDLICTLIFSVIVLGTTVNMLRNILEVLMESTPREIDAAELQRGLLEMEEVLAVHELHVWAITVGKVLMACHVIVRPEVNADMVLDKLFGEHLEVNNCLEQGFVDRERNFKLKEDEQQTLISSLEGNMPFLQMLQSVDYSPPIFPFKDPNFQALLRPQHLKKPWEGMPYVPTLESEMNELEQHTESQHKDSRLSKHERVRKRKRGRESKDKDKEEVENQRMTHIAVERNRRRQMNEHLTVLKSLMHPSYIQRGDHASIIGGAIDFVKELEQLVESLEAQRRMRNKEEEDGGMREEASSGGNEAKAERWSKVGGIEVSVIQRHVNLRIQCERRAGILINAIVALENLSLTILHLNITSSHSSVLYSFSLKIEEDSKLGSANEIAEAVDKTLSFIN 644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc91554g00005 644 Coils Coil 516 539 - -
Stsc91554g00005 644 Gene3D Cation efflux protein transmembrane domain 41 278 IPR027469 -
Stsc91554g00005 644 NCBIfam cation diffusion facilitator family transporter 42 334 IPR002524 GO:0006812|GO:0008324|GO:0016020|GO:0055085
Stsc91554g00005 644 MobiDBLite consensus disorder prediction 175 199 - -
Stsc91554g00005 644 PANTHER CATION EFFLUX PROTEIN/ ZINC TRANSPORTER 20 338 - -
Stsc91554g00005 644 Pfam Helix-loop-helix DNA-binding domain 469 520 IPR011598 GO:0046983
Stsc91554g00005 644 MobiDBLite consensus disorder prediction 427 470 - -
Stsc91554g00005 644 MobiDBLite consensus disorder prediction 175 190 - -
Stsc91554g00005 644 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 468 519 IPR011598 GO:0046983
Stsc91554g00005 644 SUPERFAMILY Cation efflux protein transmembrane domain-like 39 280 IPR027469 -
Stsc91554g00005 644 MobiDBLite consensus disorder prediction 530 551 - -
Stsc91554g00005 644 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 468 535 IPR036638 GO:0046983
Stsc91554g00005 644 CDD bHLH_AtFAMA_like 471 537 - -
Stsc91554g00005 644 Gene3D - 466 540 IPR036638 GO:0046983
Stsc91554g00005 644 MobiDBLite consensus disorder prediction 428 443 - -
Stsc91554g00005 644 Pfam Cation efflux family 45 279 IPR002524 GO:0006812|GO:0008324|GO:0016020|GO:0055085
Stsc91554g00005 644 MobiDBLite consensus disorder prediction 530 554 - -
Stsc91554g00005 644 SMART finulus 474 525 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc91554g00005 Stsc-Chr91554 9621 12843 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc91554g00005 1 339 Inorganic Solute Cotransporters AT2G46800 67.632 8.57e-158 457
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc91554g00005 Cation_efflux 2.4e-46 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc91554g00005 K14689 - ahf:112759031 509.22