Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc91554g00001 ATGCTCTCAGCAAAGGACGTCGCGTCTCGGATTGGGAGCAACAACCCAGAAGCACCTCACATGCTAGATCGTCTTCTTGGGATGTTGGCAACTCACTCTTTCCTTCGTTGCTCTGTTTCACACCATGATCATCGTCAAAGACTCTACAGCCTCTCCCCTCGCTCCAAGTATTTTGTCTCCGATCCCGACCACGGCTTCTCATTCGGACCCGTCTTGGCTTTACTTCTCGACGATGTCTTCTACCATAGCTGGAAGGAAGTGAAAGGAGCAATTATGGAAGGTGGAATTCCATTCAACAGGGTTTATGGCATGCATGCCTGA 321 0.4984 MLSAKDVASRIGSNNPEAPHMLDRLLGMLATHSFLRCSVSHHDHRQRLYSLSPRSKYFVSDPDHGFSFGPVLALLLDDVFYHSWKEVKGAIMEGGIPFNRVYGMHA 106
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc91554g00001 106 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 1 106 IPR016461 GO:0008168
Stsc91554g00001 106 SUPERFAMILY "Winged helix" DNA-binding domain 2 61 IPR036390 -
Stsc91554g00001 106 Pfam Dimerisation domain 2 30 IPR012967 GO:0046983
Stsc91554g00001 106 Gene3D - 1 98 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc91554g00001 Stsc-Chr91554 3007 3500 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc91554g00001 2 106 Monolignol Biosynthesis Gene Families AT5G54160 42.056 8.40e-23 88.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc91554g00001 K13066 - ahf:112778423 173.711