Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc91542g00002 ATGTTGGACGAAGACACCAACACCAACACCACCTCCTGGGGGCCGCGCGTGTGCGACACCTGCCGCTCTGCCCCGTGCGCTGTCTTCTGCCGTGCTGACTCCGCATACCTATGCGCCTCCTGCGACGCGCGCGTGCACGCCGCCAACACCCTCGCCTCTCGCCACGAGCGCGTCTGGGTCTGCGAGGCCTGCGAACGCGCCCCCGCCGCCTTTCTTTGTAAGGCGGATGCAGCGTCGCTATGTTCGTCATGCGACGCTGACATCCACTCAGCTAACCCTCTGGCGAGTCGTCACCAGAGGGTGCCAATTGGACCCATGTACGGTCCACCATCCGGCCCATTAAATGGACCGAACGGTGAGTTGGTTGGGATGGTTGAAGACGAAGAAGATGAAGATGATGACGAAGAAGAAGCTGCATCTTGGTTGTTGTTGAACAACACCAACACCACCACCGCAGCCGCGGCCACCAACCATAATAACAGTAACAGCAGCAATAACAATCAGAATCATCATCATCACCAGCAGAGTAACAATAACGGTTTCTTGTTTGGTGGTGAGGTTGATGAGTATTTGGACCTTGTGGATTGTAATTCTTGTGGCGATGATGATAACAATCATCACAACAACAATAACAATAACCAGTTTGCGGTTGATGGAGTTGATCATCATTATGGTCAGCAGCAACAGTATGGTGGTGGTGGTGGTGGTCAGAGGAGCTATGGTGGTGGAGGAGTAGGAGATAGTGTGGTGCCGGTTCAGCATTTTCAACTTGGTTTGGAGTTTGAACCTTCCAACAAAGCTGGCTACAATAATTACAGTGCTTCTATTAGTCAAAGTGTATCAGTTTCATCAATGGAAGTTGGTGTGGTGCCAGAATCATCAATCAGCAATGGATCAATTATTTGCCATTCAAGACCACCAAAGGGAACAATTGACCTATTTTCAGGACCTCCAATGCAGATGGCGGCTTCACATCTCACTCCGATGGACAGAGAAGCCAGAGTCCTAAGGTACAGAGAGAAGAAGAAGACAAGAAAGTTCGAGAAGACCATAAGGTATGCATCAAGAAAGGCCTATGCAGAGACTCGGCCTCGGATCAAAGGACGATTTGCCAAGAGAACAGATGTAGAAGCTGAAGTTGATCAAATGTTCTCCACACCGTTGATGACAGAAGTTGGTTATGGCATTGTTCCTTCATTCTGA 1203 0.5004 MLDEDTNTNTTSWGPRVCDTCRSAPCAVFCRADSAYLCASCDARVHAANTLASRHERVWVCEACERAPAAFLCKADAASLCSSCDADIHSANPLASRHQRVPIGPMYGPPSGPLNGPNGELVGMVEDEEDEDDDEEEAASWLLLNNTNTTTAAAATNHNNSNSSNNNQNHHHHQQSNNNGFLFGGEVDEYLDLVDCNSCGDDDNNHHNNNNNNQFAVDGVDHHYGQQQQYGGGGGGQRSYGGGGVGDSVVPVQHFQLGLEFEPSNKAGYNNYSASISQSVSVSSMEVGVVPESSISNGSIICHSRPPKGTIDLFSGPPMQMAASHLTPMDREARVLRYREKKKTRKFEKTIRYASRKAYAETRPRIKGRFAKRTDVEAEVDQMFSTPLMTEVGYGIVPSF 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc91542g00002 400 MobiDBLite consensus disorder prediction 224 245 - -
Stsc91542g00002 400 Pfam CCT motif 331 373 IPR010402 GO:0005515
Stsc91542g00002 400 CDD Bbox1_BBX-like 17 60 - -
Stsc91542g00002 400 ProSiteProfiles Zinc finger B-box type profile. 17 60 IPR000315 GO:0008270
Stsc91542g00002 400 SMART bboxneu5 13 60 IPR000315 GO:0008270
Stsc91542g00002 400 SMART bboxneu5 61 103 IPR000315 GO:0008270
Stsc91542g00002 400 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 18 390 IPR045281 GO:0009909
Stsc91542g00002 400 ProSiteProfiles CCT domain profile. 331 373 IPR010402 GO:0005515
Stsc91542g00002 400 MobiDBLite consensus disorder prediction 154 182 - -
Stsc91542g00002 400 Pfam B-box zinc finger 58 103 IPR000315 GO:0008270
Stsc91542g00002 400 ProSiteProfiles Zinc finger B-box type profile. 56 103 IPR000315 GO:0008270
Stsc91542g00002 400 CDD Bbox1_BBX-like 60 103 - -
Stsc91542g00002 400 MobiDBLite consensus disorder prediction 154 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc91542g00002 Stsc-Chr91542 20456 22415 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc91542g00002 1 400 C2C2-CO-like Transcription Factor Family AT3G02380 52.657 4.93e-123 358
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Stsc91542g00002 zf-B_box 1.7e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc91542g00002 - K12135 adu:107486540 514.227