Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc91540g00003 ATGGCAGTCATGGCTGATTTCAGGTTCTTCAGGTTCATCCTCGCCGGTGACGCCAATCAGCTGAGATTGGCCGCAGCATTTTCTGCGGCCGCACGGGACTCAATGGCCAACCCGGTGACACTCATAACGACGAACGGAGTCGAATTTAGGGTTGAGTGGATCGTGCAGCAGGCGCGTTTGAACCGCATCGTGCTCACTCGGGGGTGGGCGGATTTCTCCCGGCATTACAGTCTGCAGGAAGGGCATCTATTACTGTTCAGCTACCACTCCCCGGGAACCATGTATGTCGCTATCCATGGAGGGACTCGCATGGAGATCGATTACGGCAGGTACTTGCAGCGAGAATGTCGCAAGAGGTTACCGCAGACCGGTAACCACGTCGCCCAATTCCATGGAATCATAGGGCGCGAGGATAGACGGAGACCATACAATCTGCTGTTTCCAAGGAGGTTTGCGACCCAATTCGGCGCCGTGCTACCTGATCAGTTGAGCCTGGTGACGCCGACTGGTTGGTCAATAAGAGTGAGGTGGACCAGGGACACAGAAGGGATTATCAGACTTGGAATGACTGGGTGGCCGTGGATGTGCCTCCATTACGGACTACGGCCAGATACGTTGGTGGTGTTCCGTTACCACCTACCAGCCACCATGTACGTGGTGTTTTACCGGCCAAGCGCAATGGAGGTGAACTACCTCCAACACGGTGACGACATAATGAGATCCACGTGCATCAACAACCCCAGATACATGCCAACCAGGCACATGGTGGACTACTTTAGGTCGCGCCAACCATTCTTTGTCGTCCCCGTATGCTTTATGCGCGGCTCGCCCAAGATACTGCCAAACGTACCGCACCTATCAGAGAATGATGCTTCCGCTGTTATTGAGGTCTCGCATGGATCCAACACATGGCGGGTCGCATACGCGCGTTTCGCCGAAAGGAGTTTGGGTTGTTTGGGGAGAGGCTGGTGCACCCTGGCTACTGTGCTAGACCTACGGCCGGGCAACTTGTGCGTGTTCGAAGAAGTGGCCCCATCGCACTACCAGCTCCATATATACTGA 1062 0.5508 MAVMADFRFFRFILAGDANQLRLAAAFSAAARDSMANPVTLITTNGVEFRVEWIVQQARLNRIVLTRGWADFSRHYSLQEGHLLLFSYHSPGTMYVAIHGGTRMEIDYGRYLQRECRKRLPQTGNHVAQFHGIIGREDRRRPYNLLFPRRFATQFGAVLPDQLSLVTPTGWSIRVRWTRDTEGIIRLGMTGWPWMCLHYGLRPDTLVVFRYHLPATMYVVFYRPSAMEVNYLQHGDDIMRSTCINNPRYMPTRHMVDYFRSRQPFFVVPVCFMRGSPKILPNVPHLSENDASAVIEVSHGSNTWRVAYARFAERSLGCLGRGWCTLATVLDLRPGNLCVFEEVAPSHYQLHIY 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc91540g00003 353 SUPERFAMILY DNA-binding pseudobarrel domain 9 108 IPR015300 -
Stsc91540g00003 353 ProSiteProfiles B3 DNA-binding domain profile. 6 102 IPR003340 GO:0003677
Stsc91540g00003 353 CDD B3_DNA 39 99 IPR003340 GO:0003677
Stsc91540g00003 353 Gene3D - 124 226 IPR015300 -
Stsc91540g00003 353 Gene3D - 2 102 IPR015300 -
Stsc91540g00003 353 SUPERFAMILY DNA-binding pseudobarrel domain 137 225 IPR015300 -
Stsc91540g00003 353 PANTHER B3 DOMAIN-CONTAINING 8 117 - -
Stsc91540g00003 353 SUPERFAMILY DNA-binding pseudobarrel domain 249 353 IPR015300 -
Stsc91540g00003 353 Gene3D - 240 353 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc91540g00003 Stsc-Chr91540 17578 19292 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc91540g00003 9 168 REM Transcription Factor Family AT4G33280 24.691 4.28e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc91540g00003 - - ahf:112746889 276.944