Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc91533g00003 ATGAACACATTTTGTCACGTTCCACCGGGTTTTAGGTTCCATCCCACGGATGAAGAACTCGTTGATTACTATCTGAGGAAGAAAGTTAATTCAAGTAGGATTGACCTTGATGTCATCAAAGACGTTGACCTCTATAAAATCGAACCCTGGGATCTTCAAGAGCTATGCAGACTGGGAACAGAAGAGCAAAATGAATGGTACTTCTTTAGCCACAAGGATAAGAAATATCCAACAGGAACTCGAACAAATAGAGCAACAGCAGCAGGGTTTTGGAAAGCAACTGGAAGGGACAAAGCTATTTATTCGAAGCATGATTTGATTGGGATGAGAAAGACTCTGGTGTTCTACAAAGGTCGAGCCCCTAATGGACTCAAATCAGATTGGATCATGCATGAATATCGGCTTGAAAATGATCAGAGTGCGGCCACTCCTCAGGAAGAAGGATGGGTTGTTTGTAGAGTATTCAAGAAGAGAGTTACTTCCATTATGCGTAAGATGAGTGATCATGATTCCCCTTCTTCCACTTGGTATGATGATTCCTCTTTCATCCACCAACAACCACCCTCAGATCACTTTGACAACAACTCTTGTTCTTCTTCATCAAAGCAAATCCCTAATAATATCTTCATGTTCCACCAACACAACATCGACAACAACAACTTATTGCCATTCCACCATTTGCCTCTCCATCATCTTCCACTTCTTCATCAATCTCCTGCTCCTTCCAATAATAATAATCCAATCATGGCACTGCCATATGCTACAGGAACAGATCACACCCATAATAATGAAGCAACTGCTGCTGCTTTTCAAGAACAGCAGCAGCAACTTCAAGGGAAAGGCTTTCATCATCAGACACTACTCTATGGAAACACCACCACAAATTTAAATGAAGAGCAAGTTTCTTCATCAGCTGCTGCTTCTGATTGGAGACTTCTTGACAAGTTTGTTTCATCACAGCTTAGCCAAGATCAAACCCATAATAACAATGGTGCATCAACATCAAACTCAAGCTGTCCAATGGACGTGTGGAAATAG 1038 0.4143 MNTFCHVPPGFRFHPTDEELVDYYLRKKVNSSRIDLDVIKDVDLYKIEPWDLQELCRLGTEEQNEWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKAIYSKHDLIGMRKTLVFYKGRAPNGLKSDWIMHEYRLENDQSAATPQEEGWVVCRVFKKRVTSIMRKMSDHDSPSSTWYDDSSFIHQQPPSDHFDNNSCSSSSKQIPNNIFMFHQHNIDNNNLLPFHHLPLHHLPLLHQSPAPSNNNNPIMALPYATGTDHTHNNEATAAAFQEQQQQLQGKGFHHQTLLYGNTTTNLNEEQVSSSAAASDWRLLDKFVSSQLSQDQTHNNNGASTSNSSCPMDVWK 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc91533g00003 345 FunFam NAC domain-containing protein 16 161 - -
Stsc91533g00003 345 ProSiteProfiles NAC domain profile. 7 157 IPR003441 GO:0003677|GO:0006355
Stsc91533g00003 345 SUPERFAMILY NAC domain 5 157 IPR036093 GO:0003677|GO:0006355
Stsc91533g00003 345 Gene3D NAC domain 16 161 IPR036093 GO:0003677|GO:0006355
Stsc91533g00003 345 Pfam No apical meristem (NAM) protein 8 135 IPR003441 GO:0003677|GO:0006355
Stsc91533g00003 345 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 7 262 - -
Stsc91533g00003 345 MobiDBLite consensus disorder prediction 321 345 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc91533g00003 Stsc-Chr91533 14129 15349 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc91533g00003 1 342 NAC Transcription Factor Family AT1G12260 53.295 1.19e-114 334
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Stsc91533g00003 NAM 9.9e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc91533g00003 - - aip:107645037 487.648