Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc91533g00002 ATGGGAAGAATAACGATGCTCCTCATCAGGCTCTTATTGGTATCTTCACTTGTCTTGTCAATGGCATCAGCATCAAGAAGAGTACCTTCTTCTCCTTCTTCTTCTAGTAGCAACATTGATTGGTGGTGCAACCTAACACCACACCCTGGAACATGCAAATACTACTTAGCTCAAATCAATCAAAACCACACAACAAAAATCAAGCACAAAACCGAGTTGAGGGAGATGCTTGTGCAATCTGCATTAGAGGAAGCAACCATCATGCAAAAGGAATTACATGATTTGGAGCAAAAATTGATCAAGACAAAGAACCATGAAGCTGTGCATGGAGATTGCTTGAAGCTCTACGACAACACCGTCTTCCATCTAAAGCGTACCCTCCAATGTCTCAACGAGGGTCATCACAACTGTTCAGCTGTTGATGCACAAACATGGCTCAGCACTGCTCTCACAAACATCCAAACCTGTCAAACCGGTGCAGAAGAACTCAGCATTCAAGATTTCAATGCTTCATCTAAGAGCACCAATGTCACTGAGATGGTAAGGAACAGCTTAGCCATCAACTTGGAATTCATCAAAACCATGAAACGACCGCCACAAGAAGAAGCAGAAGCAGAAGCAGAATCAGAAGTAGAAGAAACAGAAGAAGACGATTTCCCAAGCTGGTTTTCGGGTCACGAAAGGAAGCTTCTGGCATCTAGTGAGATAAAGGCGCATGTTGTGGTGGCCAAAGACGGATCAGGGGATTTCAAGACGGTGCAAGAAGGGCTTGACGCGGCGGCGAAGAGAGCGGTGAAGACAAGCAGGTTTGTAATACACGTGAAGAAAGGAGTATACAGAGAAAACATAGAGGTTGAGAAAAACAACGATAACGTCATGCTTGTTGGCGACGGCATGAGAACCACCATCATTACCGGCAGCAGAAATTCTAAAGACGGTTACACAACTTACAGCTCCGCAACTGCCGGCATTGACGGCCTTCACTTCATCGCCAGAGACATCACTTTCCAAAACACCGCGGGCCCAGCTAAGGGCCAGGCTGTGGCCCTCAGATCGGCCTCCGACCTCTCTGTGTTCTACAAGTGCGGCATTGTTGGGTACCAAGACACGCTCATGGCCCACGCACAGCGGCAGTTCTACAGGCAGTGCTACATCTACGGCACCGTTGACTTCATCTTCGGGAACGCCGCCGTGGTGTTCCAAAACTGTCACATATTTGCAAGAAGGCCCCTGGATGGTCAAGCCAACACAATCACTGCGCAGGGCAGAGGGGATCCCTTCCAGAACACCGGAATCTCCATCCACAAATCGGTTATCAAGGCCGCACCCGATCTGGTTCCTGTTTTGGACAAGGTTCAGACCTTCTTGGGCCGGCCCTGGCAGCAGAACGCGAGGGTTGTTGTGATGAGAACTTACTTGGACTCTCTTATAAGCCCATCGGGCTGGGATGAATGGAACGGCTCCAACTTTGCTCTTGACACTCTCTATTTTGGAGAGTATGAGAATTATGGGCCTCGTGCCGATACAAAACAAAGAGTTAAGTGGCCCGGTTATCATGCCATTTCAAACCCAAATGAGGCCTCACAATTCACTGTCACTTCTCTTCTTGCTGGTCGCACCTGGTTGCCTACCACTTCTGTTCCATTCAACTCTGGCCTCTGA 1662 0.4838 MGRITMLLIRLLLVSSLVLSMASASRRVPSSPSSSSSNIDWWCNLTPHPGTCKYYLAQINQNHTTKIKHKTELREMLVQSALEEATIMQKELHDLEQKLIKTKNHEAVHGDCLKLYDNTVFHLKRTLQCLNEGHHNCSAVDAQTWLSTALTNIQTCQTGAEELSIQDFNASSKSTNVTEMVRNSLAINLEFIKTMKRPPQEEAEAEAESEVEETEEDDFPSWFSGHERKLLASSEIKAHVVVAKDGSGDFKTVQEGLDAAAKRAVKTSRFVIHVKKGVYRENIEVEKNNDNVMLVGDGMRTTIITGSRNSKDGYTTYSSATAGIDGLHFIARDITFQNTAGPAKGQAVALRSASDLSVFYKCGIVGYQDTLMAHAQRQFYRQCYIYGTVDFIFGNAAVVFQNCHIFARRPLDGQANTITAQGRGDPFQNTGISIHKSVIKAAPDLVPVLDKVQTFLGRPWQQNARVVVMRTYLDSLISPSGWDEWNGSNFALDTLYFGEYENYGPRADTKQRVKWPGYHAISNPNEASQFTVTSLLAGRTWLPTTSVPFNSGL 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc91533g00002 553 SMART PMEI_2 34 187 IPR006501 GO:0004857
Stsc91533g00002 553 Pfam Pectinesterase 239 538 IPR000070 GO:0030599|GO:0042545
Stsc91533g00002 553 Gene3D - 232 553 IPR012334 -
Stsc91533g00002 553 Gene3D Invertase/pectin methylesterase inhibitor family protein 33 190 IPR035513 -
Stsc91533g00002 553 Pfam Plant invertase/pectin methylesterase inhibitor 38 187 IPR006501 GO:0004857
Stsc91533g00002 553 NCBIfam pectinesterase inhibitor domain 12 188 IPR006501 GO:0004857
Stsc91533g00002 553 FunFam Pectinesterase 233 553 - -
Stsc91533g00002 553 SUPERFAMILY Pectin lyase-like 235 551 IPR011050 -
Stsc91533g00002 553 MobiDBLite consensus disorder prediction 197 219 - -
Stsc91533g00002 553 PANTHER PECTINESTERASE 17 544 - -
Stsc91533g00002 553 Coils Coil 78 105 - -
Stsc91533g00002 553 CDD PMEI-like_3 41 191 - -
Stsc91533g00002 553 ProSitePatterns Pectinesterase signature 2. 385 394 IPR033131 -
Stsc91533g00002 553 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 37 188 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc91533g00002 Stsc-Chr91533 10109 11770 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc91533g00002 35 553 Carbohydrate Esterase AT5G51500 52.772 0.0 572
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc91533g00002 K01051 - gmx:100806133 753.436