Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc91528g00003 ATGTTTTCAGTTGCACCCTTGTCTACGGTTGCATCACCGGCAATGGCTCCGCCGTCACCGCCGCTCTTTGACATTGCTCCTCCGCCATTGCTGCTCGAACCTACAACAGCGCCACTGCCATTTCCTTCTCCGCCATCACCGCCGTTATTAGTGCTTCCAATGCCTTCAACACCACCTCTTACCTCGCCGCCGGTTACTTCTCCGCCGGCGGTGTCTTTGCCTACGAACTCACCGCCATCGGTTACTCAACTCCCGCCGGCGATTTCCTCGTCGCCACCTCTGCCGGAAATTCCGCTCGTTCCTGCTTCACCGTCGCCTCCGATTCCAGCAACGCCGTCTTCTCCAAATACGCCATCGCCGACGACTGCATCTCCTCCGATCCAGGCGGCGCCGTTTCCTTCGTCTCCGCCGACTCTGGTTCCGCCGTCGGTGACTTTTCCGTCAACTTTGCCACCACCATTGCCGTCGCGTAACCGGAAAGTTTCGCCGGAGGTTCCAGTTCCGACAGCCACTTCGCCACCTTCACCACCGTCATCGGAATTTTGGCCTCTAGCACCGGAAGCAGCAGCCTCTCCGCGGATGCCACAGCCTCCGGCGACCGTTTACCCTTTCACGGGACCTACATTGCCATCAAGTCCAGAATCAACGCCGCCGTCGAGTCGAAGCTTGCCGCTTGCGGTGGACATTGATAAGCACTCATCAGGGTTCGAAGTGCCAAGTGGATTCATTGTTGGAGGAATTGTAATTGGTGGCATTGTTATTGGATTTGTTGTAGCACTTTTGTTACTTTTGTTCAGGAATAGAAAGAAGCAGCAGCAGAAGAAGAATCTGCAGATACATCAATCTGAGAAATCATCACCCTCTGTTGGATCTAAGACATCAGGTTCTCATGTCATTAAAGTGCTGCCAAATCCACCAAATCTAATAGAGGGTGGTGGAGATTTAGGGTCTATGAATGCCTCGGATTTGACTGCAATTCCAAACCATGCTACTGAAAGCCTTGCCTTTGGCTCTGTGAATGGCGGTTTCACATATGATGAGATAGTAGCAGCAACTAATGGTTTCTCTGAAGCCAATCTTCTTGGGGAAGGTGGATTTGGGTATGTATATAAAGGAGTTCTTACAAATGGAAAGGAAATTGCAGTTAAGCAGTTGAAATCAGGAAGCCAGCAAGGGGAGCGAGAATTTCAGGCCGAGGTCGAGACAATTAGCCGGGTGCATCATAAGCATCTTGTTGAGTTGGTTGGATACTGTGTTACCATGTCAGAAAGAATGCTTGTTTACGAATTTCTTCCAAATAACACATTGGAATTCCATTTACATGGGGAAGGGAAGCCTGTCGTAGAGTGGGAGAAAAGAATTAAGATTGCCCTGGGATCTGCAAAAGGGCTCGCATATCTGCATGAAGATTGTAATCCGGCAATCATTCACCGTGATATTAAAGCATCTAATATTCTTCTGGACTTCAATTTTGAAGCAAAGGTTTCTGACTTTGGCCTAGCAAAGATCTTTCCCAATGCTGATGGCTGCATCACTCACCTCACCACCCGTGTGATGGGAACCTTTGGGTATCTGGCTCCAGAATATGCATCAAGTGGTAAACTAACAGATAAATCAGATGTATATTCCTATGGAGTGATGCTTTTAGAACTTATAACTGGACGTCCAGCGATCACTACAGAAGGATCAAGAAACGTGAGCTTGGTTGATTGGGCTAGGCCCTTGCTTGCTCAAGTGCTAGAAGATAGTGATGATGTCAAGGATCTTGTTGATCCAAGGTTGCAGAATAATTATGGAGCTGATGAGATGAATAGAATGATTACCTGCGCAGCTGCCTGTGTGCGCCATTCAGCCAGGCTTCGACCCCGTATGAGCCAAATAGCAGGTGCCTTAGAAGGATTGGTTTCTCTGTCGGATCTTGTAGGCGATATTACACCGGGGCATGCCCGAATATACAGTTGGCCAGAGAGTTCAACTTATGATGTCTGCTACCAACAGGACTTGAGAGACTTCAATTTGGCATTATCATCTCAAACTCAAAGTGTGCAAAGTGAAATGACTAGTGCTTATGGTCTTTACCTATCTGACTCAAGTAGTGAAGGTCAATAA 2109 0.4832 MFSVAPLSTVASPAMAPPSPPLFDIAPPPLLLEPTTAPLPFPSPPSPPLLVLPMPSTPPLTSPPVTSPPAVSLPTNSPPSVTQLPPAISSSPPLPEIPLVPASPSPPIPATPSSPNTPSPTTASPPIQAAPFPSSPPTLVPPSVTFPSTLPPPLPSRNRKVSPEVPVPTATSPPSPPSSEFWPLAPEAAASPRMPQPPATVYPFTGPTLPSSPESTPPSSRSLPLAVDIDKHSSGFEVPSGFIVGGIVIGGIVIGFVVALLLLLFRNRKKQQQKKNLQIHQSEKSSPSVGSKTSGSHVIKVLPNPPNLIEGGGDLGSMNASDLTAIPNHATESLAFGSVNGGFTYDEIVAATNGFSEANLLGEGGFGYVYKGVLTNGKEIAVKQLKSGSQQGEREFQAEVETISRVHHKHLVELVGYCVTMSERMLVYEFLPNNTLEFHLHGEGKPVVEWEKRIKIALGSAKGLAYLHEDCNPAIIHRDIKASNILLDFNFEAKVSDFGLAKIFPNADGCITHLTTRVMGTFGYLAPEYASSGKLTDKSDVYSYGVMLLELITGRPAITTEGSRNVSLVDWARPLLAQVLEDSDDVKDLVDPRLQNNYGADEMNRMITCAAACVRHSARLRPRMSQIAGALEGLVSLSDLVGDITPGHARIYSWPESSTYDVCYQQDLRDFNLALSSQTQSVQSEMTSAYGLYLSDSSSEGQ 702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc91528g00003 702 CDD STKc_IRAK 361 634 - -
Stsc91528g00003 702 Pfam Protein kinase domain 356 582 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc91528g00003 702 SMART serkin_6 355 607 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc91528g00003 702 MobiDBLite consensus disorder prediction 190 214 - -
Stsc91528g00003 702 SUPERFAMILY Protein kinase-like (PK-like) 339 631 IPR011009 -
Stsc91528g00003 702 MobiDBLite consensus disorder prediction 13 159 - -
Stsc91528g00003 702 FunFam Proline-rich receptor-like protein kinase PERK8 327 430 - -
Stsc91528g00003 702 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 253 656 IPR047117 -
Stsc91528g00003 702 MobiDBLite consensus disorder prediction 1 222 - -
Stsc91528g00003 702 MobiDBLite consensus disorder prediction 278 297 - -
Stsc91528g00003 702 ProSitePatterns Protein kinases ATP-binding region signature. 361 383 IPR017441 GO:0005524
Stsc91528g00003 702 PRINTS Proline rich extensin signature 13 29 - -
Stsc91528g00003 702 PRINTS Proline rich extensin signature 48 69 - -
Stsc91528g00003 702 PRINTS Proline rich extensin signature 103 120 - -
Stsc91528g00003 702 PRINTS Proline rich extensin signature 79 95 - -
Stsc91528g00003 702 PRINTS Proline rich extensin signature 35 47 - -
Stsc91528g00003 702 ProSiteProfiles Protein kinase domain profile. 355 619 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc91528g00003 702 Gene3D Phosphorylase Kinase; domain 1 319 430 - -
Stsc91528g00003 702 ProSitePatterns Serine/Threonine protein kinases active-site signature. 475 487 IPR008271 GO:0004672|GO:0006468
Stsc91528g00003 702 Gene3D Transferase(Phosphotransferase) domain 1 431 640 - -
Stsc91528g00003 702 FunFam proline-rich receptor-like protein kinase PERK8 431 646 - -
Stsc91528g00003 702 MobiDBLite consensus disorder prediction 167 181 - -
Stsc91528g00003 702 MobiDBLite consensus disorder prediction 274 297 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc91528g00003 Stsc-Chr91528 14506 18447 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc91528g00003 245 691 Trihelix Transcription Factor Family AT5G38560 49.234 9.28e-141 426
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Stsc91528g00003 Pkinase 2.9e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc91528g00003 - - adu:107470979 812.372