Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc91523g00001 ATGGAAAAAGCGGTTGATTCCAGTGGCGAGAATAGGCAGGATCAAGGGTGTAAGAACAAGCGAAAATCGGTTCATCCTTCCGTGGCTGCTGCTAGTGGCCCCACATCTTTGATTGAGTTCCCTCGGTATGAATTACCGTCGGAGACTTCACAAAGCGTAAATGGGTCTAATCCATCTGAGGTAGTACCAGATTGGCACAGAATAGAATCAGACATGCGAATGAACGAGCTTGTGGAGTGGAATGATCCTATTGCAAACCAGCTTGAGGAATTACTGTTATCTAATTTGCAAGCTGTTTTTCATGCTGCAATCAAGCAGATTGTTGAAATGGGCTATGGTGAAGAGGTGGCTCACATGTCCATTTCAAGGAGAGCCCTGTACATAGAGGAAGGAGACCCGGTCTCGAATATTGTACAAGATACAGTGAATGTTCTCAAGGGAAAAGATAATGCTGGTTCAGATGTTGCGTTTGAAAATTTTCAGCATTTGCTGTACTACACCATGTTGGAGATGATTAGTGTACTTCGAGAAGTTCGACCGGCCTTAACAGCTGGAGAGGCAATGTGGCTTTTGTTGATGTGCGACTTGAACATATCGCTAGCCTGTTCAGCAGAAGATCGCCCGGGTGGTGTTGTTCAGAATGGGGAAAGCTCTGCTGGTTCTTCTGCTCCCCAGTCAAAGCCCGAGGTTCAAATCTCTGAATCTGACATAATAATAGAGCCGACTGTCCCAAAGGAACTGTCCCACAGTCACCAGAACTCCAAGTCTGAAACACCTAAGTTTGGAAGTTTCCAGAATACCCAGAACAGTCAAAGTGTTCTTGTTTCAGATGGGGTAAAGCTTCATAAGGGGAATGCTTCTTTGCTGGTCGCTACAGAGAAATCCTCAGGAACTTCAGCGAGTTCTGCTAAGGAATCTAAACCTGGGTCTAGTTCCAAGCGCCATAACAGAAAAGAAATAGTAGCACTTAGGCAGAAATTCCTTCATATGGAGAAAGCTTACAGGGCCTGCGGAAAAGGTGGTTTTAAATCAGGGAAGCTTACAGGTGTAAGTAGTTTGGTTCTTGAAAAAAGAATCAAGCAACCATCTGAAATTCCTAATCAGCAAACGAAGGGCGGTCCCTCGAATTCAACAAGCACAAAAGGAGTTCATTCAGCTGATGCTGCATGCTGTGTTACAACCTCAAGTGTAAGTGGTAGCACTGGAACATTACCCACTAAGGATGCATTGCCTACTTCTAATGTAGTCAACTCAATTACTTCCGTGTCGGACACTACATCCAAGCCTAAGCCTGAACCTCTTTCCACTGACAGTCAAAAGATCCTTGATTTCTGTGCTGGTATTCCTTACGATGAGTCTTTGGGTAAGTACGTGCCAAGAGACGAGAAGGATCAACTAACTTTGATGTTAATAGCTCGCGTGCAAGAACTGCAGTTTACAATGGAAAGCTGGAACAACTGGACAAAGCAAAAGGTTATGCAGGTTACTGAGAGGCTTGGAAAAGTGCAGGGTGAGCTTAAAGCTCTCAGGAAGGAGAAGCAAGATGCTGACCTATATAAAAAGGATCAGAAACTTTTGGAAGAGAATGCCGTGAAGAGAATCTCTGAGATGGAGAATGCCATGGAGAATACCAAAAAGCAAATTGAGAATGCTACTTCTGCTGCAGTTGAGCTAGAGGCAGAGAATGCTTCGCTAAAGAAGGAATTGGGCGATGCTAAATTGTGGGTCCTAAAGTCAATGACAAGCCATCGTCAAGCGCTTGAGAGAGAGCAGGCTGTTCTTAAACAGCTTCAATCATGGGAAAGCCAAAATGGTTTGCTTCGCGATGATTTTGAGAGAGAGAAGCACAGTTTATCTAACCTACAGCAAGTGCTACACAAGGAGAAAAATCTTCTATCAAACATCGAGGGTAGGCTGGGACAAGAGAGAGCTGCTAAAGAAAAGCTCCTTGCACAGGCAGCATCCATTCGAAATGATAGACAACAACTCGAAGCACACATCAAATCTGAAGAGGATAGCGTTAGAAAGAAAGCAGCCAATGATATGCAGAGATACGTGGATGATATTGCAAGGCTTGAGAAAGAGTTGATCGAGTTAAAAATAAAATCCGAGTCTGAACAAATAGCAGCTCTTCGAAGGGGTGTTGATGGTAAAAATGATAAGTTCTCCCGAAGCAGCAAGCATACTCCTACGGTGAAGGAGAACAAGAAATCTAATGCACCCCAAACAATGATGAGCAGTCGAGATAAAACGTCTGCGGGAAGCTTGAGGCGGGAGCAGGAGTGCGTCATGTGCCTATCGGATGAGATGTCAGTGGTTTTTCTGCCGTGTGCGCACCAGGTTGTTTGTCAAGACTGCAATGAGCTCCACGAGAAGCAAGGGATGAAGGATTGCCCTTCATGTAGGACCCCAATTCAACGGAGGATTCATGCCAGATTCGCCGGACATTCGAGGGTGTAG 2460 0.4492 MEKAVDSSGENRQDQGCKNKRKSVHPSVAAASGPTSLIEFPRYELPSETSQSVNGSNPSEVVPDWHRIESDMRMNELVEWNDPIANQLEELLLSNLQAVFHAAIKQIVEMGYGEEVAHMSISRRALYIEEGDPVSNIVQDTVNVLKGKDNAGSDVAFENFQHLLYYTMLEMISVLREVRPALTAGEAMWLLLMCDLNISLACSAEDRPGGVVQNGESSAGSSAPQSKPEVQISESDIIIEPTVPKELSHSHQNSKSETPKFGSFQNTQNSQSVLVSDGVKLHKGNASLLVATEKSSGTSASSAKESKPGSSSKRHNRKEIVALRQKFLHMEKAYRACGKGGFKSGKLTGVSSLVLEKRIKQPSEIPNQQTKGGPSNSTSTKGVHSADAACCVTTSSVSGSTGTLPTKDALPTSNVVNSITSVSDTTSKPKPEPLSTDSQKILDFCAGIPYDESLGKYVPRDEKDQLTLMLIARVQELQFTMESWNNWTKQKVMQVTERLGKVQGELKALRKEKQDADLYKKDQKLLEENAVKRISEMENAMENTKKQIENATSAAVELEAENASLKKELGDAKLWVLKSMTSHRQALEREQAVLKQLQSWESQNGLLRDDFEREKHSLSNLQQVLHKEKNLLSNIEGRLGQERAAKEKLLAQAASIRNDRQQLEAHIKSEEDSVRKKAANDMQRYVDDIARLEKELIELKIKSESEQIAALRRGVDGKNDKFSRSSKHTPTVKENKKSNAPQTMMSSRDKTSAGSLRREQECVMCLSDEMSVVFLPCAHQVVCQDCNELHEKQGMKDCPSCRTPIQRRIHARFAGHSRV 819
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc91523g00001 819 Coils Coil 675 709 - -
Stsc91523g00001 819 PANTHER OS05G0141500 PROTEIN 8 811 IPR046934 -
Stsc91523g00001 819 MobiDBLite consensus disorder prediction 717 753 - -
Stsc91523g00001 819 MobiDBLite consensus disorder prediction 292 307 - -
Stsc91523g00001 819 MobiDBLite consensus disorder prediction 246 267 - -
Stsc91523g00001 819 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 736 812 IPR013083 -
Stsc91523g00001 819 Pfam Family of unknown function (DUF6592) 95 204 IPR046527 -
Stsc91523g00001 819 MobiDBLite consensus disorder prediction 362 382 - -
Stsc91523g00001 819 MobiDBLite consensus disorder prediction 244 267 - -
Stsc91523g00001 819 SUPERFAMILY RING/U-box 756 808 - -
Stsc91523g00001 819 MobiDBLite consensus disorder prediction 359 382 - -
Stsc91523g00001 819 MobiDBLite consensus disorder prediction 214 231 - -
Stsc91523g00001 819 Coils Coil 618 638 - -
Stsc91523g00001 819 MobiDBLite consensus disorder prediction 1 21 - -
Stsc91523g00001 819 Pfam Zinc finger, C3HC4 type (RING finger) 759 807 - -
Stsc91523g00001 819 Coils Coil 492 568 - -
Stsc91523g00001 819 MobiDBLite consensus disorder prediction 292 318 - -
Stsc91523g00001 819 MobiDBLite consensus disorder prediction 735 751 - -
Stsc91523g00001 819 MobiDBLite consensus disorder prediction 209 231 - -
Stsc91523g00001 819 MobiDBLite consensus disorder prediction 717 734 - -
Stsc91523g00001 819 Coils Coil 646 673 - -
Stsc91523g00001 819 ProSiteProfiles Zinc finger RING-type profile. 762 802 IPR001841 -
Stsc91523g00001 819 CDD RING-HC_MIP1-like 757 809 - -
Stsc91523g00001 819 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc91523g00001 Stsc-Chr91523 4330 7724 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc91523g00001 762 809 C3H Transcription Factor Family AT1G73950 41.667 7.54e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc91523g00001 - - gmx:100793172 1016.91