Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc91520g00004 ATGCTTTCTGCTGCATCAACTGCATTTCCTATAACTTCTGTATGCTTCCATAATAATACTGTTGACGACAGGAAATTGAGCTTCTTCGAGTATAAACCGCCTGGTAGATCAAATATGGTTCCTTCAGACTTCAACAACCATGTAAGTGAACAGTCTACTCGAATAGAAGGTCCAGGAAAAGCTCAACCATTTGCATCTTCACCATTAGCTGAAAGTGAGACAGCAGATCCTTCTAATGAGTTAAGCCTATCATCGCCTGTTCAAAAGGTCAGTTCGGTTGAAGTTGATTTGGACGAGTTTAACCACAAAGGAAACACAGCAACTGGGCTTCAGGCATCAGAAGTTGAGGCTAGAGGCAGTGGACCTCCGATCGTAGCCGAGAAGGTATCTGATGATGGTTACAATTGGCGAAAATATGGACAGAAACTTGTCAAAGGGAGTGAATATCCGCGCAGCTATTACAAATGTACACATCCTAACTGTGAAGTGAAGAAACTGTTTGAACGCTCTCATGATGGTCAAATCACCGAGATAATATACAAGGGAACACATGATCACCCTAAACCTCAACCAAGTCGCCGATACTCTGCCGGTACCGGTATGTCTGTGCAAGAAGAGAGATCTGATAAGGCTTCTTTGGCAGGCCAAGATGATAGGGCATCCGGTATGTATGGTCGGGGATGTCATGCAGCTGATCCCAACGGTACTCCAGAGCTATCTCCTCGGGCAACAAACGACGACAGTCTAGAGGGTACTGGCTTGGCATCAAATAGGACTAATGATGAGGTTGATGATGATGATCCCATCTTGAAGAGAAGAAGAATGGAACTTGCAAATGCCGACATCACTCCTATTGTTAAGCCTATCCGGGAGCCAAGGGTTGTTGTACAAACTCTCAGTGAGGTTGATATTTTGGATGACGGGTACCGCTGGCGTAAGTATGGCCAGAAGGTGGTAAGAGGCAACCCTAACCCTAGGAGTTATTATAAATGCACGAACACCGGTTGCCCTGTTAGGAAACACGTGGAGAGGGCATCTCATGATCCGAAAGCAGTAATAACCACATATGAGGGTAAGCACAATCACGATGTACCAGCCGCAAGGAGTAGTAGCCACGACATGGCAGGACCGGCTGCAGTGGCGGCCGCAGCTGCAGCAGCAGCAATGGTTGGACATACAAGAATCAAGTTAGAAGAAAGCGATACCATTAGCCTTGACCTCGGTATGGGAATTAGCTCAGCAACTGAAAATAGATCAAAGGGCATTTCAGAATATGGGGAAAGCCAAAGCCTAATTCACACCAACAACAATTTCAAGTTTGTTCATACTGCAACTCCACCTCCTCCAGCATACTTTGGTGTTCTAAATCACAGCTCAATTTCTTATGGCTCTAGAGAAAATAGGAATGATGCTCCATCTTTAAACCATTCCTCATATCCTTGCTCACAGAACATGGGAAGAATACTAACTGGTCCAGGAAATTATTTTTAA 1491 0.4494 MLSAASTAFPITSVCFHNNTVDDRKLSFFEYKPPGRSNMVPSDFNNHVSEQSTRIEGPGKAQPFASSPLAESETADPSNELSLSSPVQKVSSVEVDLDEFNHKGNTATGLQASEVEARGSGPPIVAEKVSDDGYNWRKYGQKLVKGSEYPRSYYKCTHPNCEVKKLFERSHDGQITEIIYKGTHDHPKPQPSRRYSAGTGMSVQEERSDKASLAGQDDRASGMYGRGCHAADPNGTPELSPRATNDDSLEGTGLASNRTNDEVDDDDPILKRRRMELANADITPIVKPIREPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPRSYYKCTNTGCPVRKHVERASHDPKAVITTYEGKHNHDVPAARSSSHDMAGPAAVAAAAAAAAMVGHTRIKLEESDTISLDLGMGISSATENRSKGISEYGESQSLIHTNNNFKFVHTATPPPPAYFGVLNHSSISYGSRENRNDAPSLNHSSYPCSQNMGRILTGPGNYF 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc91520g00004 496 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 76 392 IPR044810 GO:0003700
Stsc91520g00004 496 MobiDBLite consensus disorder prediction 67 87 - -
Stsc91520g00004 496 ProSiteProfiles WRKY domain profile. 125 189 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc91520g00004 496 MobiDBLite consensus disorder prediction 37 87 - -
Stsc91520g00004 496 FunFam WRKY transcription factor 120 190 - -
Stsc91520g00004 496 Gene3D WRKY domain 290 366 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc91520g00004 496 Gene3D WRKY domain 124 190 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc91520g00004 496 MobiDBLite consensus disorder prediction 39 56 - -
Stsc91520g00004 496 FunFam WRKY transcription factor 33 292 358 - -
Stsc91520g00004 496 Pfam WRKY DNA -binding domain 306 362 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc91520g00004 496 Pfam WRKY DNA -binding domain 131 187 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc91520g00004 496 ProSiteProfiles WRKY domain profile. 300 365 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc91520g00004 496 MobiDBLite consensus disorder prediction 180 265 - -
Stsc91520g00004 496 SMART WRKY_cls 305 364 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc91520g00004 496 SMART WRKY_cls 130 188 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc91520g00004 496 MobiDBLite consensus disorder prediction 238 258 - -
Stsc91520g00004 496 SUPERFAMILY WRKY DNA-binding domain 297 365 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc91520g00004 496 SUPERFAMILY WRKY DNA-binding domain 127 189 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc91520g00004 496 MobiDBLite consensus disorder prediction 463 485 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc91520g00004 Stsc-Chr91520 7923 10857 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc91520g00004 2 492 WRKY Transcription Factor Family AT4G26640 53.770 4.25e-160 462
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Stsc91520g00004 WRKY 1.4e-25 CL0274