Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc91520g00003 ATGGACTCAGCTGCTGCTACTACTACCACTACCACCACCTCCAACTCAGGTTCTGAGAACCACAACCGGGGCATTGAAGATCCGAACCGAAACGGGTCGGGTCGAAATGCAGAAGCTTGTGTTGGCGGGGCAAGGTACAAGCTGATGTCGCCGGCGAAGCTTCCGATCTCTCGGTCGCCGTGCATAACCATACCTCCGGGGCTGAGTCCGACGTCGTTTTTGGAGTCCCCTGTGCTCCTTTCTAACATGAAGGTAGAGCCTTCACCAACTACAGGATCCCTTCCAAGGATTCATCAAACAGCACATGGCTCTATGCTTTCTGCTGCATCAACTGCATTTCCTATAACTTCTGTATGCTTCCATAATAATACTGTTGACGACAGGAAATTGAGCTTCTTCGAGTATAAACCGCCTGGTAGATCAAATATGGTTCCTTCAGACTTCAACAACCATGTAAGTGAACAGTCTACTCGAATAGAAGGTCCAGGAAAAGCTCAACCATTTGCATCTTCACCATTAGCTGAAAGTGAGACAGCAGATCCTTCTAATGAGTTAAGCCTATCATCGCCTGTTCAAAAGGTCAGTTCGGTTGAAGTTGATTTGGACGAGTTTAACCACAAAGGAAACACAGCAACTGGGCTTCAGGCATCAGAAGTTGAGGCTAGAGGCAGTGGACCTCCGATCGTAGCCGAGAAGGTATCTGATGATGGTTACAATTGGCGAAAATATGGACAGAAACTTGTCAAAGGGAGTGAATATCCGCGCAGCTATTACAAATGTACACATCCTAACTGTGAAGTGAAGAAACTGTTTGAACGCTCTCATGATGGTCAAATCACCGAGATAATATACAAGGGAACACATGATCACCCTAAACCTCAACCAAGTCGCCGATACTCTGCCGGTACCGGTATGTCTGTGCAAGAAGAGAGATCTGATAAGGCTTCTTTGGCAGGCCAAGATGATAGGGCATCCGGTATGTATGGTCGGGGATGTCATGCAGCTGATCCCAACGGTACTCCAGAGCTATCTCCTCGGGCAACAAACGACGACAGTCTAGAGGGTACTGGCTTGGCATCAAATAGGACTAATGATGAGGTTGATGATGATGATCCCATCTTGAAGAGAAGAAGAATGGAACTTGCAAATGCCGACATCACTCCTATTGTTAAGCCTATCCGGGAGCCAAGGGTTGTTGTACAAACTCTCAGTGAGGTTGATATTTTGGATGACGGGTACCGCTGGCGTAAGTATGGCCAGAAGGTGGTAAGAGGCAACCCTAACCCTAGGAGTTATTATAAATGCACGAACACCGGTTGCCCTGTTAGGAAACACGTGGAGAGGGCATCTCATGATCCGAAAGCAGTAATAACCACATATGAGGGTAAGCACAATCACGATGTACCAGCCGCAAGGAGTAGTAGCCACGACATGGCAGGACCGGCTGCAGTGGCGGCCGCAGCTGCAGCAGCAGCAATGGTTGGACATACAAGAATCAAGTTAGAAGAAAGCGATACCATTAGCCTTGACCTCGGTATGGGAATTAGCTCAGCAACTGAAAATAGATCAAAGGGCATTTCAGAATATGGGGAAAGCCAAAGCCTAATTCACACCAACAACAATTTCAAGTTTGTTCATACTGCAACTCCACCTCCTCCAGCATACTTTGGTGTTCTAAATCACAGCTCAATTTCTTATGGCTCTAGAGAAAATAGGAATGATGCTCCATCTTTAAACCATTCCTCATATCCTTGCTCACAGAACATGGGAAGAATACTAACTGGTCCAGGAAATTATTTTTAA 1803 0.4659 MDSAAATTTTTTTSNSGSENHNRGIEDPNRNGSGRNAEACVGGARYKLMSPAKLPISRSPCITIPPGLSPTSFLESPVLLSNMKVEPSPTTGSLPRIHQTAHGSMLSAASTAFPITSVCFHNNTVDDRKLSFFEYKPPGRSNMVPSDFNNHVSEQSTRIEGPGKAQPFASSPLAESETADPSNELSLSSPVQKVSSVEVDLDEFNHKGNTATGLQASEVEARGSGPPIVAEKVSDDGYNWRKYGQKLVKGSEYPRSYYKCTHPNCEVKKLFERSHDGQITEIIYKGTHDHPKPQPSRRYSAGTGMSVQEERSDKASLAGQDDRASGMYGRGCHAADPNGTPELSPRATNDDSLEGTGLASNRTNDEVDDDDPILKRRRMELANADITPIVKPIREPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPRSYYKCTNTGCPVRKHVERASHDPKAVITTYEGKHNHDVPAARSSSHDMAGPAAVAAAAAAAAMVGHTRIKLEESDTISLDLGMGISSATENRSKGISEYGESQSLIHTNNNFKFVHTATPPPPAYFGVLNHSSISYGSRENRNDAPSLNHSSYPCSQNMGRILTGPGNYF 600
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc91520g00003 600 MobiDBLite consensus disorder prediction 1 22 - -
Stsc91520g00003 600 MobiDBLite consensus disorder prediction 144 191 - -
Stsc91520g00003 600 FunFam WRKY transcription factor 224 294 - -
Stsc91520g00003 600 SUPERFAMILY WRKY DNA-binding domain 401 469 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc91520g00003 600 ProSiteProfiles WRKY domain profile. 404 469 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc91520g00003 600 MobiDBLite consensus disorder prediction 171 191 - -
Stsc91520g00003 600 MobiDBLite consensus disorder prediction 342 362 - -
Stsc91520g00003 600 ProSiteProfiles WRKY domain profile. 229 293 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc91520g00003 600 MobiDBLite consensus disorder prediction 284 369 - -
Stsc91520g00003 600 MobiDBLite consensus disorder prediction 567 589 - -
Stsc91520g00003 600 MobiDBLite consensus disorder prediction 1 36 - -
Stsc91520g00003 600 SMART WRKY_cls 409 468 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc91520g00003 600 SMART WRKY_cls 234 292 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc91520g00003 600 MobiDBLite consensus disorder prediction 144 160 - -
Stsc91520g00003 600 FunFam WRKY transcription factor 33 396 462 - -
Stsc91520g00003 600 Gene3D WRKY domain 394 470 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc91520g00003 600 Gene3D WRKY domain 228 294 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc91520g00003 600 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 147 495 IPR044810 GO:0003700
Stsc91520g00003 600 Pfam WRKY DNA -binding domain 235 291 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc91520g00003 600 Pfam WRKY DNA -binding domain 410 466 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc91520g00003 600 SUPERFAMILY WRKY DNA-binding domain 231 293 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc91520g00003 Stsc-Chr91520 7727 12580 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc91520g00003 49 596 WRKY Transcription Factor Family AT4G26640 55.674 0.0 532
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Stsc91520g00003 WRKY 1.8e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc91520g00003 - - gmx:100816583 885.945