Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc91520g00001 ATGCAAACATCTCAGAATCATAATAACATGTCCTACTCTTGTTGCTTTCTTCCAAGTGAGAGCCTTAAAAATTACCCTTCTTTACTTCATAATTCAGATCAATATTGCACCCTGGATTCTTCTTCTACCATTACCAACAGTTTCCCTAACCAAAATTCTCCATCTTCTCTTAGTTTCTCACCTGAGAATAGTCCAATGTTGAAGCAACTTCGAGTCGAAACGACTGTGAATGGTTCACATGACAATGAATCTTGCTTGACACATGACCAAGATGACTTGAGCAACAAGATAAGGGAATTGGAAAGTGTTATGCTAGGATCTGATGCAGATATTCTAAACACATATGGTGCTGCTATGATTCCACAAGAATATGATGACTCATTCTTGTTGGAGGAAGAGAGGTGGAGGAAAATGATGGAGGTGATATCGCGAGGCGATTTGAAAGAGATGCTTTGTGCTTGTGCAAAAGCAATGTCAGAGAATGACATGGAGACAACTGAATGGCTGATGTCTGAGCTGCAAAAAATGGTGTCGATTTCGGGGAATCCGGTCCAAAGATTAGGAGCATACATGTTGGAGGCACTTGTTGCAAGGCTAGCCTCTTCAGGAAGCACAATCTACAAAGCCTTGAGATGCAAGGAACCTACTGGCAATGAACTCCTTTCTTATATGCACATGCTTTATGAGATCTCTCCCTACCTCAAATTCGGGTATCTTTCTGCGAACGGATCGATAGCTGAAGCGATGAAGGGTGAAAATGAAGTTCACATAATTGATTTTCAGATTAACCAAGGAATTCAGTGGATAAGCCTCATAAAAGCACTTGCTGGAAGGCCTAATGGAGCACCAAAGATCAGAATAACAGGTTTTGATGACTCTACTTCTGCTTTTGCCAGAGGAGGAGGACTTAACATAGTTGGAGAAAGGTTATCAAGAATTGCAGATTCTTGTAATGTTCAATTTGAATTCCATGCTGTTGGTGTTTCCCCTTCTGAGGTGAAGCTTGATGATCTTGACATTAGGCCTGGTGAGGCCATTGCTGTGAATTTCGCCATGATGCTTCACCATTTACCGGACGAAAGCGTGGACATTCGGATGAATCATCGCGACCGGTTGTTAAGACTGGCCAAGTTCTTGTCACCTAAGGTGGTTACCTTGGTTGAGCAAGATTCTAACACAAGTAACCTTCCTTTCTTCCCACGTTTTGTTGAAACAATGAACTACTACTTGGCTGTTTTCGAATCGATCGATGCAGCTCTTCCAAGGGATCACAAAGAGAGGATCAATGTAGAACAGCACTGCCTTGCTAGAGAAGTTGTTAATCTGATAGCATGTGAAGGCGCAGAAAGAGTCGAACGCCACGAGGCTCTGAAGAAGTGGCGGTCGCGGTTCGGAAGGGCCGGATTCTCTCCATATCCTTTGAGCTCTTATGTTACTTCTTTGATAAGGCAGCTTCAAGAAAGCTACCCTGGACAATACACTCTAGAAGAGAGAGATGGTTCATTACTTCTTGGTTGGAAAAATCAATCTCTTGTTCTCTCTTGTGCTTGGAGATGA 1557 0.4265 MQTSQNHNNMSYSCCFLPSESLKNYPSLLHNSDQYCTLDSSSTITNSFPNQNSPSSLSFSPENSPMLKQLRVETTVNGSHDNESCLTHDQDDLSNKIRELESVMLGSDADILNTYGAAMIPQEYDDSFLLEEERWRKMMEVISRGDLKEMLCACAKAMSENDMETTEWLMSELQKMVSISGNPVQRLGAYMLEALVARLASSGSTIYKALRCKEPTGNELLSYMHMLYEISPYLKFGYLSANGSIAEAMKGENEVHIIDFQINQGIQWISLIKALAGRPNGAPKIRITGFDDSTSAFARGGGLNIVGERLSRIADSCNVQFEFHAVGVSPSEVKLDDLDIRPGEAIAVNFAMMLHHLPDESVDIRMNHRDRLLRLAKFLSPKVVTLVEQDSNTSNLPFFPRFVETMNYYLAVFESIDAALPRDHKERINVEQHCLAREVVNLIACEGAERVERHEALKKWRSRFGRAGFSPYPLSSYVTSLIRQLQESYPGQYTLEERDGSLLLGWKNQSLVLSCAWR 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc91520g00001 518 Pfam GRAS domain family 148 518 IPR005202 -
Stsc91520g00001 518 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 101 511 IPR005202 -
Stsc91520g00001 518 ProSiteProfiles GRAS family profile. 138 518 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc91520g00001 Stsc-Chr91520 1542 3181 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc91520g00001 1 518 GRAS Transcription Factor Family AT1G50600 56.822 0.0 577
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Stsc91520g00001 GRAS 6.1e-130 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc91520g00001 - - gmx:100817120 715.301