Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc91518g00001 ATGGAAGATAGAGATTATTTTTGTTCAACAAACTCATCAATAAGAGATGGAAATGGAAGTAAAAGCAGGAGCAAAAATCCTATTAAGACGAAGCCGAAGATTCAAAGAGAGAAACAACCAAACAAACCCTACAAAGGAATAAGGATGAGGAAGTGGGGGAAATGGGTGGCGGAGATTAGAGAACCTAACAAGAGGTCAAGGATATGGTTAGGCTCCTACATGACACCGGTAGCGGCGGCGCGAGCATACGACACGGCCGTGTTCTACCTTCGCGGGCCGTCGGCGCGGCTCAACTTCCCGGAGTTGTTGTTCCAAGATCAAGAAAGGAAAGATGATGGTGGTGGCGGTTGTTTGTTGCAAGAACGTGACATGTCAGCTGATTGCATAAGAAAAAGAGCAACACAAGTTGGAGCAAGAGTTGATGCTATTCAAACAGCACTTAATCATGCATCTTCCAACCATAATTGTTCAACTACTCCTTCTCTCCTTCAGAAACCTGATTTGAATGAGTTTCCTAAACCTGATGATGAAGAAGATTCCCTTCACTTCTAG 552 0.442 MEDRDYFCSTNSSIRDGNGSKSRSKNPIKTKPKIQREKQPNKPYKGIRMRKWGKWVAEIREPNKRSRIWLGSYMTPVAAARAYDTAVFYLRGPSARLNFPELLFQDQERKDDGGGGCLLQERDMSADCIRKRATQVGARVDAIQTALNHASSNHNCSTTPSLLQKPDLNEFPKPDDEEDSLHF 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc91518g00001 183 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 29 178 - -
Stsc91518g00001 183 SUPERFAMILY DNA-binding domain 43 101 IPR016177 GO:0003677
Stsc91518g00001 183 MobiDBLite consensus disorder prediction 169 183 - -
Stsc91518g00001 183 Pfam AP2 domain 44 92 IPR001471 GO:0003700|GO:0006355
Stsc91518g00001 183 MobiDBLite consensus disorder prediction 1 41 - -
Stsc91518g00001 183 MobiDBLite consensus disorder prediction 151 183 - -
Stsc91518g00001 183 CDD AP2 44 102 IPR001471 GO:0003700|GO:0006355
Stsc91518g00001 183 Gene3D AP2/ERF domain 43 101 IPR036955 GO:0003700|GO:0006355
Stsc91518g00001 183 SMART rav1_2 43 106 IPR001471 GO:0003700|GO:0006355
Stsc91518g00001 183 MobiDBLite consensus disorder prediction 151 165 - -
Stsc91518g00001 183 FunFam Ethylene-responsive transcription factor 2 42 101 - -
Stsc91518g00001 183 PRINTS Ethylene responsive element binding protein signature 44 55 IPR001471 GO:0003700|GO:0006355
Stsc91518g00001 183 PRINTS Ethylene responsive element binding protein signature 82 102 IPR001471 GO:0003700|GO:0006355
Stsc91518g00001 183 ProSiteProfiles AP2/ERF domain profile. 43 100 IPR001471 GO:0003700|GO:0006355
Stsc91518g00001 183 MobiDBLite consensus disorder prediction 7 25 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc91518g00001 Stsc-Chr91518 10166 10838 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc91518g00001 34 178 AP2-EREBP Transcription Factor Family AT2G23340 56.129 3.40e-50 158
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Stsc91518g00001 AP2 6.1e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc91518g00001 K09286 - gmx:547642 214.542