Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc91517g00003 ATGATTGACCGAACACCACTAATTGATGGAGAAGACACAACAAAGGGAACAGTGCTAGAGAAAATGAATGGGAAGCTAGACTTTGAACATGTGAAGTTCACATACCCATCAAGACCAGACAACCTAGTACTGAATGACTTCAATCTGAGAGTTGAATCAGGGAAAACGGTTGCACTTGTGGGCGCAAGTGGGAGTGGGAAGTCAACGGCAATAGCATTGTTGCAAAGATTCTATGATGTGGATGAAGGTGTTGTGAGGGTTGATGGTGTTGACATAAAGAGGTTGCAGTTGAAGTGGTTGAGGGGTAAAATGGGGCTTGTGAGCCAAGAACATGCATTGTTTGGGACATCTATTAAGGAGAATATTATGTTTGGGAAGCTTGATGCTACCATGGATGAGGTTGTTGCTGCTGCTACTGCTGCTAATGCTCATAACTTCATTAGGCAGCTTCCTCAGGGTTATGAAACCAAGATTGGGGAAAGAGGGGCACTTATTTCAGGAGGACAAAAGCAGCGAATAGCCATTGCAAGAGCCATCATAAAGAACCCAGTGATTTTGCTTCTTGATGAAGCCACCAGTGCTCTCGATTCTGAATCTGAATTACTTGTCCAAAATGCCCTTGATCTAGCCTCATTGGGCAGGACTACATTGGTTGTTGCACACAAGTTGTCAACTGTCCGAAACGCAGACCTCATAGCAGTTGTCAACGGCGGTTCAGTCATCGAAACCGGCACGCACAACGAGCTCATAACCCGTCCTAACGGCCACTATGCAAAGCTAGCAAAACTCCAGACACAACTCAGCTTTGATGACCAACAAGATATATCAAATGCTCTTTCTTCTGCAGCAAGAAGCAGTGCTGGTAGAACCAGCACAGCAAGATCAACAAGCCCTGCAATTTTCCCAAAATCACCAATCCTTGGTGATGATAACACCATAACCCCAGAATCATCTCTTGTTTCTCACCCTACTCCTTCTTTTACAAGGCTTCTATCTCTGAATGCACCTGAATGGAAACAAGGTTTGATTGGTACTTTTTCCGCAATAGCTTTCGGCTCAGTGCAACCCATATATGCCTTAACAATTGGTGGCATGATTTCTGCATTTTTCGCCGAAAGCCATAGCGAAATGATTCACAGAATCAGGACTTACTCTTTGATCTTCACTTCTCTTTCTGTTGCTTCCATCACACTCAACCTCTTGCAGCACTACAATTTCGCATACATGGGAGCAAAACTAACGAAAAGGATAAGGCAGCGAATGCTTGAGAATATATTAACATTTGAAACGGCATGGTTCGATGAAGAACATAATTCCAGTGGAGCATTGTGCTCAAGGTTAAGCAATGAGGCTTCCATGGTTAAGTCCCTTGTCGCCGACCGCATCTCATTGCTGGTTCAAACAGCTTCTGCTGTCAGCATTGCAATGATCATAGGACTCGCCGTGGCGTGGAAGCTAGCTCTTGTTATGATAGCAGTGCAACCACTCACAATCCTATGCTTCTACACAAGAAAAGTTCTTCTTTCTACACTCTCAACAAAATTCATCAAGGCACAGAATCAAAGCACACAGATTGCGGTTGAAGCAGTGTACAATCACAGAATTGTGACTTCATATGGGAGCATACAAAAGGTTTTAACATTATTTGATGAAGCGCAGGAGGCGCCAAGAAAGGAGGCGAGGAAGAAGTCGTGGCTGGCCGGGATTGGAATGGGGTCTGCTCAATGCCTAACTTTCATGACATGGGCTTTGGATTTCTGGTATGGAGGGACATTGGTGGAGAAGAAGGAGATTTCTTCAGGGGATGTGTTTAAGACATTCTTTGTTTTGGTGAGCACTGGGAAGGTCATTGCTGAAGCTGGAAGCATGACTTCTGATCTTGCAAAGAGCTCTACTGCTGTCAAATCTGTGTTTGAGATTCTTGACAGGAAATCACTTATTCACAAGGCTGGATATTGCAACAATGGAAGAAAGTTGGAAAATATGAGTGGGAAGATAGAATTAAAGAACGTTGATTTTGCCTATCCAAGCAGGGCAGGGACTCCGATACTGCGCAAGTTTTGTTTGGAGGTGAAGGCAGGGAAGAGTATTGGCCTAGTTGGGAAGAGTGGTTGTGGAAAATCAACAGTGATTGCATTGATCCAAAGATTCTATGATGTTGAGAGAGGGTTTGTGAAAGTGGACAATGTGGACATAAGGGAACTAGATATTCAATGGTGCAGGCAGCACACTGCACTTGTTAGCCAAGAACCTGTCCTATATTCTGGAACCATAAGAGATAACATCTTGTTTGGTAAGCAAGATGCAACTGAGAATGAAGTAGTTGAAGCTGCAAAAGCAGCAAATGCTCACGAGTTCATATCGGGAGTACAACTGTCTGGAGGGCAAAAGCAGAGAATAGCAATAGCAAGGGCCATAATAAGGAACCCAACAATATTGCTGCTAGATGAAGCAACAAGTGCACTTGATGTTCAATCAGAACAAGTTGTGCAAGAAGCATTAGACAGGATCATGGTGGGGAGAACCACCATTGTTGTGGCACATAGGCTCAACACTATCAAAGAACTAGACTCTATTGCTTATGTCTCAGAGGGTAAGGTTCTTGAGCAAGGAACCTATGCTCAGCTTAGGCACAAGAGAGGTGCCTTCTTCAACCTTGCATGCAATCAAATCCAAAATTAA 2682 0.4389 MIDRTPLIDGEDTTKGTVLEKMNGKLDFEHVKFTYPSRPDNLVLNDFNLRVESGKTVALVGASGSGKSTAIALLQRFYDVDEGVVRVDGVDIKRLQLKWLRGKMGLVSQEHALFGTSIKENIMFGKLDATMDEVVAAATAANAHNFIRQLPQGYETKIGERGALISGGQKQRIAIARAIIKNPVILLLDEATSALDSESELLVQNALDLASLGRTTLVVAHKLSTVRNADLIAVVNGGSVIETGTHNELITRPNGHYAKLAKLQTQLSFDDQQDISNALSSAARSSAGRTSTARSTSPAIFPKSPILGDDNTITPESSLVSHPTPSFTRLLSLNAPEWKQGLIGTFSAIAFGSVQPIYALTIGGMISAFFAESHSEMIHRIRTYSLIFTSLSVASITLNLLQHYNFAYMGAKLTKRIRQRMLENILTFETAWFDEEHNSSGALCSRLSNEASMVKSLVADRISLLVQTASAVSIAMIIGLAVAWKLALVMIAVQPLTILCFYTRKVLLSTLSTKFIKAQNQSTQIAVEAVYNHRIVTSYGSIQKVLTLFDEAQEAPRKEARKKSWLAGIGMGSAQCLTFMTWALDFWYGGTLVEKKEISSGDVFKTFFVLVSTGKVIAEAGSMTSDLAKSSTAVKSVFEILDRKSLIHKAGYCNNGRKLENMSGKIELKNVDFAYPSRAGTPILRKFCLEVKAGKSIGLVGKSGCGKSTVIALIQRFYDVERGFVKVDNVDIRELDIQWCRQHTALVSQEPVLYSGTIRDNILFGKQDATENEVVEAAKAANAHEFISGVQLSGGQKQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIMVGRTTIVVAHRLNTIKELDSIAYVSEGKVLEQGTYAQLRHKRGAFFNLACNQIQN 893
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc91517g00003 893 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 342 629 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc91517g00003 893 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 656 890 IPR027417 -
Stsc91517g00003 893 Pfam ABC transporter transmembrane region 342 612 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc91517g00003 893 Pfam ABC transporter 687 820 IPR003439 GO:0005524
Stsc91517g00003 893 PANTHER ABC TRANSPORTER B FAMILY 343 886 IPR039421 -
Stsc91517g00003 893 Gene3D - 656 893 IPR027417 -
Stsc91517g00003 893 SMART AAA_5 693 872 IPR003593 GO:0016887
Stsc91517g00003 893 SMART AAA_5 53 279 IPR003593 GO:0016887
Stsc91517g00003 893 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 666 889 IPR003439 GO:0005524
Stsc91517g00003 893 FunFam Putative ABC transporter B family member 8 307 651 - -
Stsc91517g00003 893 Gene3D - 24 286 IPR027417 -
Stsc91517g00003 893 CDD ABC_MTABC3_MDL1_MDL2 27 264 - -
Stsc91517g00003 893 Gene3D ABC transporter type 1, transmembrane domain 1 593 IPR036640 GO:0005524|GO:0016020
Stsc91517g00003 893 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 17 264 IPR027417 -
Stsc91517g00003 893 Pfam ABC transporter 44 193 IPR003439 GO:0005524
Stsc91517g00003 893 SUPERFAMILY ABC transporter transmembrane region 329 643 IPR036640 GO:0005524|GO:0016020
Stsc91517g00003 893 FunFam ABC transporter B family member 4 16 273 - -
Stsc91517g00003 893 FunFam ABC transporter B family member 20 656 891 - -
Stsc91517g00003 893 MobiDBLite consensus disorder prediction 280 306 - -
Stsc91517g00003 893 MobiDBLite consensus disorder prediction 280 299 - -
Stsc91517g00003 893 CDD ABC_6TM_Pgp_ABCB1_D2_like 331 647 - -
Stsc91517g00003 893 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 26 262 IPR003439 GO:0005524
Stsc91517g00003 893 ProSitePatterns ABC transporters family signature. 165 179 IPR017871 GO:0005524|GO:0016887
Stsc91517g00003 893 ProSitePatterns ABC transporters family signature. 792 806 IPR017871 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc91517g00003 Stsc-Chr91517 10466 16166 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc91517g00003 1 883 Calmodulin-binding Proteins AT2G36910 44.771 0.0 750
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc91517g00003 K05658 - gmx:100801088 1451.03