Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc91516g00003 ATGTGTCTCCAAATCTTATGTTTATTACTTATATTAAAAATAAATGCAGCAGAAGAATCATATGAATCTGAGTATAGAGTAATAAATCTTCCTGGGCAGCCTTCAAGCCCATCAGTTTCACACTTCTCAGGTTATATCACTGTCAATGAAGATCATGGGAGGGCCCTCTTCTACTGGTTCTTTGAAGCTCAATCTGAACCCTCCAATAAGCCCCTCCTTCTCTGGCTCAATGGAGGACCTGGATGCTCCTCCATTGGATATGGTGCAGTTGTTGAGATAGGGCCTCTTACAATCAACCAAAATGGTGATGGCCTGCATTTCAACACGTACTCTTGGTATCAAGAAGCGAATTTGTTATTTGTGGAGTCCCCTATTGGAGTTGGATTTTCTTACAGCAATACAACTTCTGATTATCTCACCATTTTAGAGGATAATTTTGTTGCTGAGGATGCCTACAATTTCTTGGTGAATTGGCTTCAACAATTCCCACAATTCAAATCCAGAGACTTTTTCATAGCTGGAGAAAGCTATGGTGGACACTATATCCCCCAGCTCGCGGAGCTAGTTTTCGATCGAAACAAAGATAAAAGCAGATACCCTTTTATCAATCTTAAAGGTTTCATTGTAGGGAATCCAAAAACAGATGATTACTATGACAATAAAGGGCTTGTGGAATATGCATGGAGCCATGCAGTTATATCAGACCAACAATATGACAAGGCAAAACAAGTTTGTGATTTCAAGAAATCTGAATGGTCTAATGAATGTAACATTGCCATGAATGAGATCTTCCAAGATTACTCAGAAATTGATATATACAACATTTATGCTCCGGCGTGTCGTCTTAATAATAACTCATCTAACAATAATCATGGCCTGGAATCACTTGCAGAGATGATGAGAATTGGAAATAATAAGTATAAAAAAGTAAAGAGGATGAGAATTTTTGAAGGGAATGATCCATGCTATTCAACATATGCAGAGGAATATTTCAATAGGGTAGATGTTCAATCATCTTTTCATGCAAATATCAGAGGAGCAAACACTAAAGCAGCATGGAAAGTCTGCAATGATTCCATATTGAGGACTTACAATTTCTCTGTCTTTTCGGTCCTACCAATCTACACCAAACTCATCAAGGGTGGCCTTAAAATATGGATTTACAGTGGAGACACAGATGGGAGAATACCAGTGATAGGGACAAGGTATTGGGTTGAAGCTCTGGGATTATCTCTGAAGTCCAGTTGGCAGAACTGGTACCATGATAATCAGGTTGGTGGAAGGATAGTGGAATATGAAGGGGTAACATATGTGACAGTAAGAGGGGCAGGTCACTTGGTACCACTAAACAAACCAAGTGAGGCTCTCTCACTCATTCGTTCTTTCCTTTCTGGCCAGCATCTCCCTACTCATGCCCACTAA 1422 0.3966 MCLQILCLLLILKINAAEESYESEYRVINLPGQPSSPSVSHFSGYITVNEDHGRALFYWFFEAQSEPSNKPLLLWLNGGPGCSSIGYGAVVEIGPLTINQNGDGLHFNTYSWYQEANLLFVESPIGVGFSYSNTTSDYLTILEDNFVAEDAYNFLVNWLQQFPQFKSRDFFIAGESYGGHYIPQLAELVFDRNKDKSRYPFINLKGFIVGNPKTDDYYDNKGLVEYAWSHAVISDQQYDKAKQVCDFKKSEWSNECNIAMNEIFQDYSEIDIYNIYAPACRLNNNSSNNNHGLESLAEMMRIGNNKYKKVKRMRIFEGNDPCYSTYAEEYFNRVDVQSSFHANIRGANTKAAWKVCNDSILRTYNFSVFSVLPIYTKLIKGGLKIWIYSGDTDGRIPVIGTRYWVEALGLSLKSSWQNWYHDNQVGGRIVEYEGVTYVTVRGAGHLVPLNKPSEALSLIRSFLSGQHLPTHAH 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc91516g00003 473 FunFam Carboxypeptidase 371 465 - -
Stsc91516g00003 473 ProSitePatterns Serine carboxypeptidases, serine active site. 172 179 IPR018202 GO:0004185
Stsc91516g00003 473 Gene3D - 322 360 - -
Stsc91516g00003 473 ProSitePatterns Serine carboxypeptidases, histidine active site. 435 452 IPR033124 GO:0004185
Stsc91516g00003 473 SUPERFAMILY alpha/beta-Hydrolases 27 468 IPR029058 -
Stsc91516g00003 473 FunFam Carboxypeptidase 320 468 - -
Stsc91516g00003 473 Pfam Serine carboxypeptidase 31 465 IPR001563 GO:0004185|GO:0006508
Stsc91516g00003 473 PRINTS Carboxypeptidase C serine protease (S10) family signature 108 120 IPR001563 GO:0004185|GO:0006508
Stsc91516g00003 473 PRINTS Carboxypeptidase C serine protease (S10) family signature 121 131 IPR001563 GO:0004185|GO:0006508
Stsc91516g00003 473 PRINTS Carboxypeptidase C serine protease (S10) family signature 158 183 IPR001563 GO:0004185|GO:0006508
Stsc91516g00003 473 PRINTS Carboxypeptidase C serine protease (S10) family signature 435 448 IPR001563 GO:0004185|GO:0006508
Stsc91516g00003 473 Gene3D - 371 465 - -
Stsc91516g00003 473 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 28 452 IPR001563 GO:0004185|GO:0006508
Stsc91516g00003 473 FunFam Carboxypeptidase 21 282 - -
Stsc91516g00003 473 Gene3D alpha/beta hydrolase 19 291 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc91516g00003 Stsc-Chr91516 9313 12277 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc91516g00003 353 468 Calmodulin-binding Proteins AT2G22960 31.624 3.03e-14 69.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc91516g00003 K16297 - gmx:100792930 773.467