Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc91506g00001 ATGGATTCTTCTGCTTCCACATTCCTCAACGACCTTCCTCCCCTCAAGAGACTCAGATTACAACTCCAACAACATACTACCTCCTCTCCCTTACCCGCCAAGAAGCGCAAAGATTCTCGAAACGCTGCGTTTTACCAAAACCCAATCCCAATCCCTCCTCCCGTCACTGCTTATTCTTTACCCGCCAAGAAACGAGTATGCGCTCTTCAACCCTTCCTCACTCAAAACGACGCCGTTTCGCCCTTCCAATTCGACCTCAACGTCGAATTCCAAGAAAACGACGAAAACCTACAATCTCCATCCAAATCTCCTCAAGAGCAATCGCTTGACGGTAACGGTAACGGTAATAACGTCAACGATTGCGATGCTGTTGACGATGACGACGGGATTTTATGCTGTGTGTGCCAGAGCACAGACGGAGACCCTGCGGATCCGATCGTCTTCTGCGACGGTTGCGATCTAATGGTGCACGCTTCCTGCTACGGAAATCCGCTCTCAAAATCAATCCCCGGCGGCGACTGGTTCTGCGAACGGTGTCGTTTCAAACGCGACGACGAATCTGCTGCTGCTTCTTCAGATCTGATCTCTGGTTCTTGCTGCCTCTGTCCGGTGACCGAAGGCGCGATGAAGAGGACGGCGGATAACCGTTGGGCTCACATCGTTTGCGCGCTGCTGGTGCCGGAGGTGTTCTTCTTGGATCCTGAAGGGAGAGAGGGGATCGATTGCTCTATGGTTCCGAAGAAGAGGTGGTTGGAGAGGTGCTATGTGTGTGATTCTTGTGACGGTTGTGCTGTTGTGTGCTCTGAGCCCAAGTGTGGTTTGGCGTTTCATGTCACGTGTGGGATCAGAGAGGAGCTTTGTATTGAGTATAAGGAAGGGAAGAAGGGCGCTACCATTGTTGCTGGCTTCTGCAAAACTCATACTCAAATTTGGGACAAGCAATCAGGGAAATACAAAATTGTTGCGGTTGAAGATAAAATGTAG 984 0.5061 MDSSASTFLNDLPPLKRLRLQLQQHTTSSPLPAKKRKDSRNAAFYQNPIPIPPPVTAYSLPAKKRVCALQPFLTQNDAVSPFQFDLNVEFQENDENLQSPSKSPQEQSLDGNGNGNNVNDCDAVDDDDGILCCVCQSTDGDPADPIVFCDGCDLMVHASCYGNPLSKSIPGGDWFCERCRFKRDDESAAASSDLISGSCCLCPVTEGAMKRTADNRWAHIVCALLVPEVFFLDPEGREGIDCSMVPKKRWLERCYVCDSCDGCAVVCSEPKCGLAFHVTCGIREELCIEYKEGKKGATIVAGFCKTHTQIWDKQSGKYKIVAVEDKM 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc91506g00001 327 ProSiteProfiles Extended PHD (ePHD) domain profile. 196 308 IPR034732 -
Stsc91506g00001 327 MobiDBLite consensus disorder prediction 93 119 - -
Stsc91506g00001 327 SUPERFAMILY FYVE/PHD zinc finger 123 183 IPR011011 -
Stsc91506g00001 327 PANTHER PHD FINGER PROTEINS 92 308 - -
Stsc91506g00001 327 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 195 310 IPR013083 -
Stsc91506g00001 327 ProSiteProfiles Zinc finger PHD-type profile. 129 182 IPR019787 -
Stsc91506g00001 327 Pfam PHD-zinc-finger like domain 198 307 - -
Stsc91506g00001 327 ProSitePatterns Zinc finger PHD-type signature. 132 179 IPR019786 -
Stsc91506g00001 327 CDD ePHD 199 307 - -
Stsc91506g00001 327 SMART PHD_3 131 180 IPR001965 -
Stsc91506g00001 327 SMART PHD_3 253 308 IPR001965 -
Stsc91506g00001 327 CDD PHD_BRPF_JADE_like 131 179 - -
Stsc91506g00001 327 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 110 192 IPR013083 -
Stsc91506g00001 327 Pfam PHD-finger 132 181 IPR019787 -
Stsc91506g00001 327 MobiDBLite consensus disorder prediction 93 120 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc91506g00001 Stsc-Chr91506 12538 14230 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc91506g00001 11 325 C2H2 Transcription Factor Family AT3G14740 50.592 6.11e-103 304
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Stsc91506g00001 zf-HC5HC2H_2 1.8e-26 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc91506g00001 K11380 - gmx:100802652 390.578