Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc91503g00002 ATGCCGCGACTCATTTTCAAAGCTGTGCCATTTTTGCTACTAGTTTTACTATGCTCAAGTCGTTTAACTAAAGGGGTGGCACTTTCTCATTCTCTCACAAGGGACAGTGACACCCAGATTTTGCTGCAGGTGAAGAACAATGAGCTTCAAGACCAAAACGACAGTCTCAAAAGCTGGTCACTGGACACAAACCGCACTAGTAGTCCATGCAACTGGACCGGCATTACCTGCGACGCACGAAACCAATCGGTTCTCTCCATCGACCTCTCTCAAACCGGCGTCTACGGCTCTTTCCCATCCGGTTTTTGCCGCATTAACACTCTCCAAACCCTCAACCTCGCTTCCAACTTCTTAGGCGGCGCCATCTCCTCTCAATCACTCTCTCTCTGTTCCCACCTCCGCCTATTGGACCTCTCAGACAACCTCTTCGTCGGACCCCTGCCGGAATTCTCGCCGGAATTTTCTCAACTAACAGAACTTGACCTCTCAAAGAACAACTTCACCGGCGAAATTCCGGCGAGTTTCGGCCGGTTCCCGAACCTGAGCAAGCTCATTCTGTCAGGGAACCTTCTCAACGGAACCATTCCTCCATTCTTGGGCAACCTCAGTGCACTGGTTCATCTTGAACTCGCTTATAATCCATTGAAACCAGGATCATTACCTTCACAAATAGGAAACCTCTCTAACCTTGAAGTTCTGTTCCTCGCACAAAATAACCTCATAGGTGAAATACCAGACTCCATTGGAAACCTCATGAAGCTTCAGAACTTGGATTTGTCGCAGAACTCACTGTCAGGTATGATCCCAAGCAGCATTTCAAGACTGAAGAGTGTGAAGCAAATAGAGCTATTCTATAACCAGCTTTCCGGCGAAGTGCCACGTGGCATAGGAAATCTCACAAGTTTGGTTCGTTTGGACCTCTCTCAGAACGCTCTCACGGGAACACTGCCAGATTCAGTTGCTGCATTGCACCTCAATTCTCTTAACTTGAACGACAACCTTCTCAGTGGAGAAATCCCTATTACTCTTTCTTCCAACCCTAATTTGAATCAATTGAAGCTCTTCAACAACAGTTTCACCGGGAAACTACCCCAAGATCTCGGAAGATGCTCCGAGTTGGAGGAATTCGATGTCTCAACCAATGATTTCGCGGGAGAATTGCCCAAATACCTTTGCCAAGGGAACAAGCTTCACCATTTTGTCACCTTCACCAATCGGTTTTCCGGAACGATTCCTGATCAATACGGAGAGTGTGATTCCCTTGAATATGTCCGAATCGAGAATAACCAACTCTCCGGTCAAGTACCTCCGATGTTCTGGAGCCTCCCGAAGCTTCAGCTTCTTCAAATGGATAACAACAGGTTCGAAGGCTCTGTCTCTTCTTCCATTTCCAGCGCCAGGGGAATCACTGTTCTTCTTTTATCCGGTAACAGCTTCTCAGGGAATATTCCGAAGGAAATTTGTGAACTCGATCAGCTTGTGAAGATTGACATCAGCGAAAACCGGTTTTCCGGTGAAGTTCCCAGTTGCATAACAGGGTTGAAAAGGTTGCAGAAGCTTAGGATGCAGAATAACGCGTTCACCGGTGATATTCCCGGTAATGTGAGCTCATGGACCGAGTTGACTGAGTTGAACTTGTCTCATAACCAATTCTTCGGTTCAATCCCGCCAAAAATCGGTGACTTGCCGCAGTTGACTTACCTTGACCTCGCCGGAAATTTGCTAAGAGGTGAGATTCCGGTGGAGCTGACGAAACTCACACTCAATGAATTCAATATATCTGACAACAAATTGTACGGAGAAGTTCCTTCAGGTTTCAACCACCAAGTTTACTTGTCAGGTCTTATGGGAAACCCTGGTCTCTGTAGCCTAGTTATCAAAGAACTTTCTCCTTGTTCCAAACGCAGACCATTTTCCAAAATTGCTATACTTGCTTTATCTGCATGTGTGGTGCTCCTTCTGCTGTCTTTGCTCTATTTCTTGAAGACAACAAACTCAATTCATTTTGTTGCCAAGTCCAAGCGTTCATTCAAGACAACAGCTTTCCAACGGGTTGCTTTCAACGAAGAAGATATATTCCCCTTGTTAACTAATGACAATGTGATTGCTTCTGGAAGTTCCGGTCAGGTTTACAGGGTGAACCTCCCCAAGACGGGTCAGAAAGTGGCGGTGAAGAAGCTCTGGGGGGGAGGAAGGCAAGAGCAAGACAGAGAGACTGAATCGGTGTTCAGGTCGGAGATTGAGACGTTGGGGACAATCCGCCATGCTAACATTGTGAAGCTGCTGTTCTGTTGCAGTGGTGATGATTTCAGGATATTGGTGTATGAGTACATGGAGAATGGAAGCTTGGGTGATGTTTTGCATGAGGACAAGTGTGGCGAGTTGTTGGATTGGAACAAGAGGTTTGAAATTGCTGTGGGTGCGGCTCTGGGGTTGGCTTATTTGCACCATGATTGTGTCCCTGCCATAGTTCATAGGGATGTGAAGAGCAATAACATATTGCTTGATCATGAGTTTAGGCCTCGTGTGGCGGATTTTGGGCTTGCTAAGACCTTGCAGCATGAGGCTGGTGAGGGAGGTGCCGGTGCTGGTGCCATGTCCATGGTTGCTGGATCATATGGTTATATTGCCCCAGAGTATGCTTATACGCTCAAAGTAACTGAGAAGAGTGATGTGTACAGTTTTGGTGTGGTTTTGATGGAACTGCTCACAGGCAAGAGGCCAAATGACCCTTCCTTTGGGGAGAACAAAGACATAGTGAGGTGGGTCACTGAGACTGCTTTGCTATCATCTCTTGATGGAGAAAATGGCAATATTGAGGGTGGTCACGATCATATTGATATCATGAGAAAGATTGTGGACCCAAGATTGAACCCTGCAACTTGTGATTATGAGGAGTTTGAGAAAGTTTTAAATGTGGCCCTACTTTGCACCTCAGTGTTTCCCATTAACAGACCCTCAATGAGAAGGGTGGTTGAATTGCTCAAGGACCATAAGCTGCCTCGTCCCAAGTTATGA 3018 0.4652 MPRLIFKAVPFLLLVLLCSSRLTKGVALSHSLTRDSDTQILLQVKNNELQDQNDSLKSWSLDTNRTSSPCNWTGITCDARNQSVLSIDLSQTGVYGSFPSGFCRINTLQTLNLASNFLGGAISSQSLSLCSHLRLLDLSDNLFVGPLPEFSPEFSQLTELDLSKNNFTGEIPASFGRFPNLSKLILSGNLLNGTIPPFLGNLSALVHLELAYNPLKPGSLPSQIGNLSNLEVLFLAQNNLIGEIPDSIGNLMKLQNLDLSQNSLSGMIPSSISRLKSVKQIELFYNQLSGEVPRGIGNLTSLVRLDLSQNALTGTLPDSVAALHLNSLNLNDNLLSGEIPITLSSNPNLNQLKLFNNSFTGKLPQDLGRCSELEEFDVSTNDFAGELPKYLCQGNKLHHFVTFTNRFSGTIPDQYGECDSLEYVRIENNQLSGQVPPMFWSLPKLQLLQMDNNRFEGSVSSSISSARGITVLLLSGNSFSGNIPKEICELDQLVKIDISENRFSGEVPSCITGLKRLQKLRMQNNAFTGDIPGNVSSWTELTELNLSHNQFFGSIPPKIGDLPQLTYLDLAGNLLRGEIPVELTKLTLNEFNISDNKLYGEVPSGFNHQVYLSGLMGNPGLCSLVIKELSPCSKRRPFSKIAILALSACVVLLLLSLLYFLKTTNSIHFVAKSKRSFKTTAFQRVAFNEEDIFPLLTNDNVIASGSSGQVYRVNLPKTGQKVAVKKLWGGGRQEQDRETESVFRSEIETLGTIRHANIVKLLFCCSGDDFRILVYEYMENGSLGDVLHEDKCGELLDWNKRFEIAVGAALGLAYLHHDCVPAIVHRDVKSNNILLDHEFRPRVADFGLAKTLQHEAGEGGAGAGAMSMVAGSYGYIAPEYAYTLKVTEKSDVYSFGVVLMELLTGKRPNDPSFGENKDIVRWVTETALLSSLDGENGNIEGGHDHIDIMRKIVDPRLNPATCDYEEFEKVLNVALLCTSVFPINRPSMRRVVELLKDHKLPRPKL 1005
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc91503g00002 1005 SUPERFAMILY Protein kinase-like (PK-like) 697 995 IPR011009 -
Stsc91503g00002 1005 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 277 996 - -
Stsc91503g00002 1005 SMART LRR_typ_2 227 251 IPR003591 -
Stsc91503g00002 1005 SMART LRR_typ_2 442 466 IPR003591 -
Stsc91503g00002 1005 SMART LRR_typ_2 514 538 IPR003591 -
Stsc91503g00002 1005 SMART LRR_typ_2 562 586 IPR003591 -
Stsc91503g00002 1005 SMART LRR_typ_2 154 177 IPR003591 -
Stsc91503g00002 1005 SMART LRR_typ_2 299 323 IPR003591 -
Stsc91503g00002 1005 SMART LRR_typ_2 178 202 IPR003591 -
Stsc91503g00002 1005 Pfam Leucine rich repeat N-terminal domain 35 78 IPR013210 -
Stsc91503g00002 1005 Pfam Leucine rich repeat 253 312 IPR001611 GO:0005515
Stsc91503g00002 1005 Pfam Leucine rich repeat 155 215 IPR001611 GO:0005515
Stsc91503g00002 1005 FunFam Probable leucine-rich repeat receptor-like protein kinase At5g63930 218 318 - -
Stsc91503g00002 1005 SUPERFAMILY RNI-like 75 399 - -
Stsc91503g00002 1005 Gene3D Ribonuclease Inhibitor 156 267 IPR032675 -
Stsc91503g00002 1005 FunFam LRR receptor-like serine/threonine-protein kinase HSL2 778 1004 - -
Stsc91503g00002 1005 SUPERFAMILY L domain-like 321 633 - -
Stsc91503g00002 1005 ProSitePatterns Serine/Threonine protein kinases active-site signature. 823 835 IPR008271 GO:0004672|GO:0006468
Stsc91503g00002 1005 Gene3D Ribonuclease Inhibitor 325 637 IPR032675 -
Stsc91503g00002 1005 Gene3D Phosphorylase Kinase; domain 1 672 777 - -
Stsc91503g00002 1005 FunFam Leucine-rich repeat receptor-like protein kinase TDR 320 634 - -
Stsc91503g00002 1005 Pfam Protein kinase domain 699 912 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc91503g00002 1005 Gene3D Transferase(Phosphotransferase) domain 1 778 1001 - -
Stsc91503g00002 1005 Gene3D Ribonuclease Inhibitor 268 324 IPR032675 -
Stsc91503g00002 1005 Gene3D Ribonuclease Inhibitor 35 155 IPR032675 -
Stsc91503g00002 1005 ProSiteProfiles Protein kinase domain profile. 696 1001 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc91503g00002 1005 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 34 202 - -
Stsc91503g00002 1005 PRINTS Leucine-rich repeat signature 299 312 - -
Stsc91503g00002 1005 PRINTS Leucine-rich repeat signature 254 267 - -
Stsc91503g00002 1005 SMART serkin_6 696 1001 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc91503g00002 Stsc-Chr91503 14202 18029 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc91503g00002 32 999 Receptor kinase-like Gene Family AT5G65710 56.397 0.0 1054
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Stsc91503g00002 Pkinase 1.8e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc91503g00002 - - gmx:100813889 1348.18