Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc91500g00005 ATGCTACCATCATCAGCACCAACTTCCATTGATGCACAAAAAACCAACTTGAACCAAACTACACACATCTTCAAATCAAAATTACCAGACATACCCATCAACAATACCATTTCCCTACACACTTATTCCTTTCATAAGCTCCCTCAAGTCTCTCATCGCCCGTGTCTCATCACAGGCGATGGCAAGGCTTACACCTACGGTGATACCCACCGAGCTTCTAGAAGCTTTGCGGTGGGCCTATTCAACCTAGGAATCCGCAAAGGCGACGTTATCATGATCCTACTCCCGAACTCTCCGGAATTCGTGTTCTCTTTTTGGGCCGCTTCTATGCTTGGCGCAGTTTCCACCACTGCCAACCCTTCTTACACTTCCGCTGAAATCACAAAGCAGCTCAAAGCCTCCAAGGCCAAAATCATCATTACACATGCCATTCACGTGCACAAGCTCAAACAAGAAGAAAAAACCGCCTTCATAGTGATAACTGTGGACAGCCCGCCGGAGAACTGCATAAGTTTCTCGGCGGTTTCCAACATGGAAGGGAAGTTGCCGGAGGTGGAGATTGACCCTGACGACATGGTGACACTGCCATTTTCCTCCGGCACGACGGGATTGCCGAAGGGTGTGATTCTAACACACAGGAGGCTTATAACAAACGTGGCTCAGACGGTTGATGGAGAGAACCCTAACTTGAACATGAAGGAAGAGGATGTAGTGCTTTGTGTCCTACCGTTGTTTCACATTTACGCACTACACTCTGTGATGTTGTGTTCTATGAGAGTAGGGTGTAGGATATTGCTTATGGAGAAGTTTGAGATGAGGGCGTTGTTAGAGCTTGTGGAGAAGCATAGGGTTTCGGTTGTTATGGCGGTGCCGCCGTTGCTGGCGGCACTGTCAAAGAACCCCATGGTGGAGGAGTATAATCTTAGCTCCATCCGAATGGTGATGTCTGGAGGTGCCTTGCTTAGCAAGGACATCGAGGAAGCTTTTCGTAGTAGATTGCCTCAAACAATTCTTGGACAGGCTTTGGGGATGACCGAATCCGGGCCAGTGATAGCAATGCCATTAGGGTTTGCGAAGCATCCGATGCCAATGAAATTAGAATCATGCGGCAGTTTAATTAGAAATGCAAAGATGAAAATCATTGATCCGCTAACTGGCTCTTCTCTCCCTTATAATACTTCCGGAGAGATTTGCATTCGAGGTGCACAGATCATGAAAGGATACCTGAATGATGAGAAGGCCACAGCAGAAGCAATTGATGATGAGGGTTGGCTTCATACTGGTGATATTGGTTATGTGGATAATAATGATGAGATTTTCATTGTTGATAGACTTAAGGAACTCATCAAATTCAAAGCCTTCCAGGTGGCTCCGGCAGAACTTGAAGGCCTTCTTAAGAGCCACCCTTCCATTGAAGATGCAGCTGTTGTCCCGCAAAAAGATGATGTAGCTGGTGAAGTTCCAGTTGCTTTTGTGGTGAGGTCATCATCAAATAATGGTAATTTTGATCTTATCACTGAAGATGCTATAAAGGACTTTATAGCTAAACAGGTAGTGTTTTACAAGAAGCTAAAGAGAGTAATATTCATTGATGAAATCCCAAAGTCTGCAATTGGCAAGATATTAAGAAAAGAACTCAAAGCAAAGCTCGCTAGCTAG 1659 0.4533 MLPSSAPTSIDAQKTNLNQTTHIFKSKLPDIPINNTISLHTYSFHKLPQVSHRPCLITGDGKAYTYGDTHRASRSFAVGLFNLGIRKGDVIMILLPNSPEFVFSFWAASMLGAVSTTANPSYTSAEITKQLKASKAKIIITHAIHVHKLKQEEKTAFIVITVDSPPENCISFSAVSNMEGKLPEVEIDPDDMVTLPFSSGTTGLPKGVILTHRRLITNVAQTVDGENPNLNMKEEDVVLCVLPLFHIYALHSVMLCSMRVGCRILLMEKFEMRALLELVEKHRVSVVMAVPPLLAALSKNPMVEEYNLSSIRMVMSGGALLSKDIEEAFRSRLPQTILGQALGMTESGPVIAMPLGFAKHPMPMKLESCGSLIRNAKMKIIDPLTGSSLPYNTSGEICIRGAQIMKGYLNDEKATAEAIDDEGWLHTGDIGYVDNNDEIFIVDRLKELIKFKAFQVAPAELEGLLKSHPSIEDAAVVPQKDDVAGEVPVAFVVRSSSNNGNFDLITEDAIKDFIAKQVVFYKKLKRVIFIDEIPKSAIGKILRKELKAKLAS 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc91500g00005 552 Pfam AMP-binding enzyme C-terminal domain 460 540 IPR025110 -
Stsc91500g00005 552 ProSitePatterns Putative AMP-binding domain signature. 195 206 IPR020845 -
Stsc91500g00005 552 Gene3D - 446 551 IPR045851 -
Stsc91500g00005 552 FunFam 4-coumarate--CoA ligase 2 447 552 - -
Stsc91500g00005 552 CDD 4CL 28 546 - -
Stsc91500g00005 552 FunFam Long-chain-fatty-acid--CoA ligase FadD 25 446 - -
Stsc91500g00005 552 Gene3D - 14 445 IPR042099 -
Stsc91500g00005 552 SUPERFAMILY Acetyl-CoA synthetase-like 36 551 - -
Stsc91500g00005 552 Pfam AMP-binding enzyme 52 451 IPR000873 -
Stsc91500g00005 552 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 19 548 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc91500g00005 Stsc-Chr91500 15444 18447 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc91500g00005 23 477 Monolignol Biosynthesis Gene Families AT3G21240 58.225 0.0 566
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc91500g00005 K01904 - gmx:100790396 706.827