Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc91497g00001 ATGGGAAGACCACCATGTTGTGATAAAGAAGGTGTGAAGAAAGGACCTTGGACTCCTGAAGAAGACATCTTATTAGTCTCTTATATTCAAGAACATGGCCCTGCAAATTGGAAAGCTATTCCTTCTAAGACTGGCTTGTTAAGGTGCAGTAAGAGTTGTAGGCTTAGATGGACAAATTACTTGAGGCCAGGAATCAAAAGGGGTAATTTCACAAACCAAGAAGAGAATATGATTATTCACCTTCAAGCTCTACTTGGAAACAGATGGGCTGCAATAGCTTCCTACCTTCCACAAAGAACAGATAATGACATAAAAAATTATTGGAATACATATCTGAAAAAAAGGGTCAGCAAGAAATTGGAAGAAGAAAAAAAAGGGTTTTCATCAATTTCTTCTTCTTCTTCTCATTCTCAGAAGAAGGTAGTTATGCCACGTGGACAGTGGGAAAGAAGGCTCCAAACAGATATCAACATGGCAAAGAAAGCTCTCACTCATGCACTCTCACCCCAAAACAATATTAATAATAATAATAATAATATTGAATCCTTATCTTCCTCCTCTTCTTCTTCTAATTCCAATTCTAATTCTTGTTCATCCAAAAATAATAATAATATTTCAAGCTATGCTTCAAATGCTGATAACATAGCTCGGTTACTCAAAGGCTGGATGAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAAGGGTATAATAGGAAGAAAAGAGTCAGAGAATTTTGATGAGTCCTTGTTGAATGGGAATCATGAAGAGGAGTGTTTGGAGGAGTCTTCAAATAATAACAATTCATCATCAGAGTTTTCTCAATCACAGGAAGAAAGCAAGCCTGAAAGTGGTGAAGTTTTGATGCCTTTCCATTTGCTTGAGAAATGGCTTCTTGATGAGACCATTATTTAG 975 0.3313 MGRPPCCDKEGVKKGPWTPEEDILLVSYIQEHGPANWKAIPSKTGLLRCSKSCRLRWTNYLRPGIKRGNFTNQEENMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTYLKKRVSKKLEEEKKGFSSISSSSSHSQKKVVMPRGQWERRLQTDINMAKKALTHALSPQNNINNNNNNIESLSSSSSSSNSNSNSCSSKNNNNISSYASNADNIARLLKGWMNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNKGIIGRKESENFDESLLNGNHEEECLEESSNNNNSSSEFSQSQEESKPESGEVLMPFHLLEKWLLDETII 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc91497g00001 324 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Stsc91497g00001 324 CDD SANT 69 112 IPR001005 -
Stsc91497g00001 324 SMART sant 66 114 IPR001005 -
Stsc91497g00001 324 SMART sant 13 63 IPR001005 -
Stsc91497g00001 324 CDD SANT 16 61 IPR001005 -
Stsc91497g00001 324 MobiDBLite consensus disorder prediction 126 147 - -
Stsc91497g00001 324 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Stsc91497g00001 324 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Stsc91497g00001 324 Gene3D - 7 66 - -
Stsc91497g00001 324 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Stsc91497g00001 324 MobiDBLite consensus disorder prediction 166 205 - -
Stsc91497g00001 324 Gene3D - 69 143 - -
Stsc91497g00001 324 MobiDBLite consensus disorder prediction 222 259 - -
Stsc91497g00001 324 FunFam MYB-related transcription factor 13 66 - -
Stsc91497g00001 324 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Stsc91497g00001 324 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Stsc91497g00001 324 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Stsc91497g00001 324 MobiDBLite consensus disorder prediction 127 141 - -
Stsc91497g00001 324 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 251 - -
Stsc91497g00001 324 MobiDBLite consensus disorder prediction 277 307 - -
Stsc91497g00001 324 MobiDBLite consensus disorder prediction 283 302 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc91497g00001 Stsc-Chr91497 13191 14706 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc91497g00001 1 321 MYB Transcription Factor Family AT5G62470 46.705 2.38e-92 277
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc91497g00001 Myb_DNA-binding 1.7e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc91497g00001 K09422 - gmx:780543 312.768