Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc91485g00004 ATGGAATTTGTTCTTCCCCCTCCTTTCATCTTCCTAATCCTATTCTTGTCTCTCACGGTGACTTCCACCTTCACAAAAGATACAAATCTCATCTTATTCTTGTCTTTAATGGCCTCGCTATTCATATATGTTTGCCTTAACTATGTTGCGTCACTGTTGAAGACACATATTGATGAGAGGAACAGAGTCAGAGACGCAGCAACATTATCAGAACCAGAAGAGCCGATGCAAACAGGTTATCGTATTGAACGTTTAATGGCTCATCAGAGAGAATATGTAGATTATAGTAGGCTACAACAACATACAGGGTTACAACACAATTATGATTATGCAAAAATAAGCATTGTTAGGAAAGCTTTGAGGGTGTTGCCACCGGTTAAGAGCTTTGTTGTTGAAGACAAAAGCAATGGATGCCCTGATATGATTGAATGCTCTATTTGCATGGAAGTGTTTAAGGATGGGGAGTTGGTTCAACCTCTTGGATTGTGTTCTCATCAGTTTCATTCTTCTTGTCTATATTCTTGGTTGCACAGTGGAAAATCTACTTGTCCCCTTTGCCGTGTGGATTTAGCAACAGCATAG 582 0.3969 MEFVLPPPFIFLILFLSLTVTSTFTKDTNLILFLSLMASLFIYVCLNYVASLLKTHIDERNRVRDAATLSEPEEPMQTGYRIERLMAHQREYVDYSRLQQHTGLQHNYDYAKISIVRKALRVLPPVKSFVVEDKSNGCPDMIECSICMEVFKDGELVQPLGLCSHQFHSSCLYSWLHSGKSTCPLCRVDLATA 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc91485g00004 193 SMART FANCL_C_2 140 193 - -
Stsc91485g00004 193 SUPERFAMILY RING/U-box 143 191 - -
Stsc91485g00004 193 SMART ring_2 144 186 IPR001841 -
Stsc91485g00004 193 ProSiteProfiles Zinc finger RING-type profile. 144 187 IPR001841 -
Stsc91485g00004 193 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 26 189 IPR044675 -
Stsc91485g00004 193 Pfam Ring finger domain 143 187 IPR001841 -
Stsc91485g00004 193 CDD RING-H2 144 187 - -
Stsc91485g00004 193 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 104 192 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc91485g00004 Stsc-Chr91485 19501 20082 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc91485g00004 117 187 C3H Transcription Factor Family AT2G17450 41.333 1.42e-11 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc91485g00004 - K10664 aip:107632256 210.69