Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc91485g00003 ATGAGTAGGGTTAGCGGCAAGGTGAAGTGGTTCAATGACCAGAAGGGTTTCGGTTTCATAACCCCCGACGATGGCGGCGAAGAACTCTTCGTTCATCAATCTTCGATTCGATCCGAAGGGTTCCGCAGCCTCGCCGAGGGTGAGTCCGTTGAGTTCGCTGTAGAGTCAGACCCTGATGGTCGCACCAAGGCCGTTGATGTCACTGGACCTGATGGCGCCAACGTTCAGGGTAGCCGTCGTGGCGGAGGAGGCGGCGGCGGCGGTGGTGGTGGTAGGGGTTACGGTGGTGGAAGAGGCGGCGGGGGCTACGGTGGTGGCGGATATGGTGGTGGAGGAGGATATGGCGGAGGTGGTCGCGGTGGAGGACGTGGTGGCGGTGGATATGGTGGTGGTGGGTACGGAGGAGGAGGCGGAGGCGGTGGCGCATGCTACAGCTGCGGTGGGATGGGTCACATGGCCAGAGATTGCAACCAGGGAGGAGGAGGAGGTGGAGGCAGGTACGGCGGAGGAGGCGGTGGTGGCGGCGGTGGAAGCTGCTACAGCTGTGGGGATTCTGGGCATTTTGCAAGGGACTGCCCTCAAGGCTCTCGCTGA 594 0.6246 MSRVSGKVKWFNDQKGFGFITPDDGGEELFVHQSSIRSEGFRSLAEGESVEFAVESDPDGRTKAVDVTGPDGANVQGSRRGGGGGGGGGGGRGYGGGRGGGGYGGGGYGGGGGYGGGGRGGGRGGGGYGGGGYGGGGGGGGACYSCGGMGHMARDCNQGGGGGGGRYGGGGGGGGGGSCYSCGDSGHFARDCPQGSR 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc91485g00003 197 Gene3D - 138 166 - -
Stsc91485g00003 197 Gene3D - 174 197 - -
Stsc91485g00003 197 ProSiteProfiles Zinc finger CCHC-type profile. 143 158 IPR001878 GO:0003676|GO:0008270
Stsc91485g00003 197 SMART c2hcfinal6 178 194 IPR001878 GO:0003676|GO:0008270
Stsc91485g00003 197 SMART c2hcfinal6 142 158 IPR001878 GO:0003676|GO:0008270
Stsc91485g00003 197 PANTHER COLD SHOCK DOMAIN PROTEIN 2 110 194 - -
Stsc91485g00003 197 Pfam 'Cold-shock' DNA-binding domain 5 69 IPR002059 GO:0003676
Stsc91485g00003 197 CDD CSP_CDS 4 69 IPR002059 GO:0003676
Stsc91485g00003 197 FunFam Cold shock protein 1 1 68 - -
Stsc91485g00003 197 ProSiteProfiles Cold-shock (CSD) domain profile. 3 69 IPR002059 GO:0003676
Stsc91485g00003 197 SUPERFAMILY Retrovirus zinc finger-like domains 135 195 IPR036875 GO:0003676|GO:0008270
Stsc91485g00003 197 ProSiteProfiles Zinc finger CCHC-type profile. 179 194 IPR001878 GO:0003676|GO:0008270
Stsc91485g00003 197 ProSitePatterns Cold-shock (CSD) domain signature. 17 36 IPR019844 -
Stsc91485g00003 197 Gene3D - 1 81 IPR012340 -
Stsc91485g00003 197 Pfam Zinc knuckle 142 157 IPR001878 GO:0003676|GO:0008270
Stsc91485g00003 197 Pfam Zinc knuckle 178 194 IPR001878 GO:0003676|GO:0008270
Stsc91485g00003 197 SMART csp_8 5 70 IPR011129 GO:0003676
Stsc91485g00003 197 MobiDBLite consensus disorder prediction 54 89 - -
Stsc91485g00003 197 PRINTS Cold shock protein signature 42 60 IPR002059 GO:0003676
Stsc91485g00003 197 PRINTS Cold shock protein signature 6 21 IPR002059 GO:0003676
Stsc91485g00003 197 PRINTS Cold shock protein signature 27 36 IPR002059 GO:0003676
Stsc91485g00003 197 SUPERFAMILY Nucleic acid-binding proteins 3 69 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc91485g00003 Stsc-Chr91485 12908 13501 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CSD Stsc91485g00003 CSD 6.8e-26 CL0021
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc91485g00003 - - adu:107476544 157.532