Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc91442g00003 ATGTATACGATGTCTTCTCTTCTTTGGAGCTCCATTGCAATGTATCTCACTCTTGCACTTGCACTTGCACACCCACACCCTTCTTCACACCATCCTCTTAGGATTTCTCGCTTACCAGGTCAACCCCTTGTTCAGTTTCAACACTTTTCAGGTTATGTTCCCCTTGATAACACCAACAACAAAGCTCTTTTCTTCTACTTCGTTGAAGCTCAAAACGATGCTCCTTCCAAACCCCTTGTTCTTTGGCTCAATGGAGGGCCTGGTTGTTCTTCTATTGGAGTTGGTGCATTTTCTGAAAATGGTCCATTTAGGCCAAAAGGAGAAGCCTTGGTGAGGAACCAATTCAGCTGGAACAGAGAAGCAAATATTTTGTACCTGGAAACACCAATTGGAGTTGGATTCTCTTATTCAAAAGATACTTCCTCTTATGTGGGTGTAAATGACAAGATCACAGCCAGGGATAACTTAATATTCTTGAAAAACTGGTTTGTAAAGTTCCCAGACTACAGAAACAGAAGTTTGTTCATAGTAGGAGAAAGCTATGCTGGCCACTATGTTCCTCAACTTGCTGAGCTTTTGCTAGAATTCAACAAAAAAGACAAGTTGTTCAATTTAAAAGGAATTGCACTTGGCAACCCAGTTCTTGAATTTGAAACAGATTTCAATTCAAGAGCTGAATTCTTCTGGTCACATGGACTAATCTCAGATGTAACATTCCAAATGTTCACATCTGTGTGTAACTATTCAAGATATGTGAGGGAATATTATAGTGGTGCTGTTTCTCCTATGTGTTCAAGGGTTATGAGCCAAGTTAGCACAGAAACAAGTAGATTCGTCGACAAGTATGATGTTACACTTGATGTTTGTATATCCTCAGTGTTTTCACAAACCAAGGTCCTCAATCCTCAGCAAGTTACCGAAAGCATAGACGTGTGCGTTGAAGACGAAACCGTGAATTATCTGAACCGGAAGGATGTTCAGTCGGCTTTGCATGCGCGGTTGGTTGGAGTACAAAAATGGTCTGCTTGCAGCAATGTACTAGATTATGAGCTGCGCAATTTGGAGATACCGACAATTGCAATTGTCGGTAAACTAGTCAAGGCAGGAATACCAGTGTTGGTCTACAGTGGGGATCAAGATTCAGTTATACCATTGACTGGAAGTAGAAAATTAGTGCATCAATTGGCAAAGCTGCTGAGGCTGAGGACAACTGTGCCATACAGGGTCTGGTTTGAGGGGCAGCAGGTGGGTGGGTGGACTCAAGTTTATGGTAATATCCTTTCATTTGCCACCATTAGAGGAGCATCACATGAAGCTCCATTTTCACAGCCTGAGAGATCACTTGTACTGTTCAAGTCCTTCTTAGAAGGTCGACCTCTACCTGAAGAATTTTAG 1395 0.4194 MYTMSSLLWSSIAMYLTLALALAHPHPSSHHPLRISRLPGQPLVQFQHFSGYVPLDNTNNKALFFYFVEAQNDAPSKPLVLWLNGGPGCSSIGVGAFSENGPFRPKGEALVRNQFSWNREANILYLETPIGVGFSYSKDTSSYVGVNDKITARDNLIFLKNWFVKFPDYRNRSLFIVGESYAGHYVPQLAELLLEFNKKDKLFNLKGIALGNPVLEFETDFNSRAEFFWSHGLISDVTFQMFTSVCNYSRYVREYYSGAVSPMCSRVMSQVSTETSRFVDKYDVTLDVCISSVFSQTKVLNPQQVTESIDVCVEDETVNYLNRKDVQSALHARLVGVQKWSACSNVLDYELRNLEIPTIAIVGKLVKAGIPVLVYSGDQDSVIPLTGSRKLVHQLAKLLRLRTTVPYRVWFEGQQVGGWTQVYGNILSFATIRGASHEAPFSQPERSLVLFKSFLEGRPLPEEF 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc91442g00003 464 Gene3D - 359 457 - -
Stsc91442g00003 464 SUPERFAMILY alpha/beta-Hydrolases 38 461 IPR029058 -
Stsc91442g00003 464 Pfam Serine carboxypeptidase 40 457 IPR001563 GO:0004185|GO:0006508
Stsc91442g00003 464 FunFam Carboxypeptidase 28 461 - -
Stsc91442g00003 464 ProSitePatterns Serine carboxypeptidases, serine active site. 176 183 IPR018202 GO:0004185
Stsc91442g00003 464 FunFam Carboxypeptidase 358 457 - -
Stsc91442g00003 464 Gene3D alpha/beta hydrolase 31 291 IPR029058 -
Stsc91442g00003 464 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 36 444 IPR001563 GO:0004185|GO:0006508
Stsc91442g00003 464 PRINTS Carboxypeptidase C serine protease (S10) family signature 126 136 IPR001563 GO:0004185|GO:0006508
Stsc91442g00003 464 PRINTS Carboxypeptidase C serine protease (S10) family signature 113 125 IPR001563 GO:0004185|GO:0006508
Stsc91442g00003 464 PRINTS Carboxypeptidase C serine protease (S10) family signature 162 187 IPR001563 GO:0004185|GO:0006508
Stsc91442g00003 464 PRINTS Carboxypeptidase C serine protease (S10) family signature 427 440 IPR001563 GO:0004185|GO:0006508
Stsc91442g00003 464 ProSitePatterns Serine carboxypeptidases, histidine active site. 427 444 IPR033124 GO:0004185
Stsc91442g00003 464 Gene3D - 312 348 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc91442g00003 Stsc-Chr91442 15537 18603 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc91442g00003 320 460 Calmodulin-binding Proteins AT2G22960 27.660 4.63e-14 68.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc91442g00003 K16297 - gmx:100805130 798.89