Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc91432g00001 ATGGCAAGGATATCGAGGTCCTCTGCGCCGCGCCTGCTCTACACCTTCTTCTCCTCCACCACGCTCTCCGCGTCCCCTGTGCCGTCTTCGTCCCCGGCGTCCTCCCTCCTCGCCGGCGCCTTCCACCTGCGGCACTTCTCGTCTGGCAACGCTGCTCGCGCGAAGGCGGCTACGGCGGATAAGGAGCCATGGTGGAAGGAGTCTATGGAGAGGTTACGCAACATCGGGATCTCAGCTCACATCGACTCCGGCAAGACAACTTTGACGGAGCGGGTGCTTTTCTACACCGGTCGTATCCATGAGATCCACGAGGTTCGGGGCAGAGACGGCGTCGGCGCCAAGATGGATTCCATGGACTTGGAGAGGGAGAAAGGAATCACTATCCAGTCCGCAGCTACTTACTGCTCTTGGAATGACTACAAGATTAACATAATTGACACACCTGGTCACGTTGATTTCACCATTGAAGTTGAGAGGGCTTTGCGTGTCCTTGATGGTGCTATTCTTGTACTTTGCAGTGTTGGTGGTGTGCAAAGTCAGTCCATTACAGTAGATCGACAAATGAGAAGATACGAGGTTCCAAGACTTGCATTTATCAACAAGCTTGATCGGATGGGAGCAGATCCATGGAAAGTTTTATATCAGGCACGGTCTAAGCTTCGGCATCATAGTGCTGCAATGCAAGTTCCAATAGGCTTGGAGGATGATTTTGAGGGACTTGTTGATCTTGTGCAGTCAAAAGCATACTATTTTCGCGGTTCTAATGGTGAAAAAGTTGTCACTGAAGAGGTGCCTGGAGATATGGGAGCCTTGGTAGCAGAAAAAAGGCGTGAGCTCATAGAAGCTGTGTCAGAAGTTGATGATCAACTTGCTGAAGCTTTTCTTGGTGATGAGCCCATATCACCTGCTGACCTTCAGGAAGCAATTCGTAGGGCCACTATAGCACGGAAGTTTGTACCTGTTTTCATGGGTAGTGCTTTTAAAAATAAGGGGGTACAGCCACTTCTGGATGGTGTACTTGATTATTTGCCATGTCCAATTGAAGTTAGTAGTTATGCCCTTGACCAAACAAAGAATGAGGAAAAGGTTGAGTTGACTGGAAGTCCTGATGGGCCCCTTGTAGCATTGGCATTTAAGTTGGAGGAAGGGCGGTTTGGCCAGTTAACATATTTAAGAATTTATGAGGGTGTGATCCGAAAGGGAGAGTTTATTATTAATGTAAACACCGGCAAGAAGATCAAGGTTCCTCGCTTAGTTCGGATGCATTCTGATGAGATGGAGGACATTCAAGAGGCTCATGCAGGGCAAATAGTTGCTGTATTTGGTGTTGATTGTGCATCAGGAGATACATTTACTGATGGGTCAGTTAAATACACAATGACTTCCATGAATGTTCCTGAACCTGTAATGTCATTAGCTGTACAGCCAGTTTCAAAAGATTCTGGAGGGCAATTTTCAAAAGCTTTGAATCGTTTCCAGAAAGAGGATCCCACTTTCCGTGTTGGTTTGGACCCAGAGAGCGGGCAGACTATCATTTCTGGAATGGGAGAACTACACTTAGATATTTATGTTGAACGTATCAGGAGAGAGTATAAGGTTGATGCAACTGTTGGAAAGCCCCGTGTAAACTTCAGAGAAACTGTTACACAACGTGCTGATTTTGATTATTTACACAAGAAGCAAACTGGAGGGCAAGGTCAATATGGACGGGTAATCGGGTATATTGAACCACTTCCAGCAGGATCACAAACTAAATTTGAATTTGAAAACCACCTTGTTGGGCAAGCTATTCCATCAAATTTTATTCCTGCCATTGAAAAAGGTTTTAAGGAAGCCGCCAACTCGGGGGCTTTAATTGGACATCCAGTCGAAAATCTTCGAGTTGTCTTGACAGATGGTGCTGCTCATGCTGTTGATTCTAGTGAACTTGCATTTAAGTTGGCTTCTATCTATGCTTTCAGACAGTGCTATGCAGCTTCCAGGCCAGTTATATTAGAACCTGTTATGCTTGTTGAGATGAAAGTACCAACAGAATTCCAAGGAGCTGTTGCCGGTGACATTAACAAGAGAAAAGGTGTGATTGTTGGCAATGATCAGGAAGGAGATGACTCTATCATCACTGCCCATGTCCCTCTTAACAATATGTTTGGGTATTCTACAGCTCTTCGTTCAATGACGCAGGGGAAAGGTGAGTTCACAATGGAATACAAGGAACATTCACCTGTATCTCATGATGTACAGACGCAGTTAATAAACACCTACAAGGGAAAGGCAGCTGAATGA 2283 0.4577 MARISRSSAPRLLYTFFSSTTLSASPVPSSSPASSLLAGAFHLRHFSSGNAARAKAATADKEPWWKESMERLRNIGISAHIDSGKTTLTERVLFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATYCSWNDYKINIIDTPGHVDFTIEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVLYQARSKLRHHSAAMQVPIGLEDDFEGLVDLVQSKAYYFRGSNGEKVVTEEVPGDMGALVAEKRRELIEAVSEVDDQLAEAFLGDEPISPADLQEAIRRATIARKFVPVFMGSAFKNKGVQPLLDGVLDYLPCPIEVSSYALDQTKNEEKVELTGSPDGPLVALAFKLEEGRFGQLTYLRIYEGVIRKGEFIINVNTGKKIKVPRLVRMHSDEMEDIQEAHAGQIVAVFGVDCASGDTFTDGSVKYTMTSMNVPEPVMSLAVQPVSKDSGGQFSKALNRFQKEDPTFRVGLDPESGQTIISGMGELHLDIYVERIRREYKVDATVGKPRVNFRETVTQRADFDYLHKKQTGGQGQYGRVIGYIEPLPAGSQTKFEFENHLVGQAIPSNFIPAIEKGFKEAANSGALIGHPVENLRVVLTDGAAHAVDSSELAFKLASIYAFRQCYAASRPVILEPVMLVEMKVPTEFQGAVAGDINKRKGVIVGNDQEGDDSIITAHVPLNNMFGYSTALRSMTQGKGEFTMEYKEHSPVSHDVQTQLINTYKGKAAE 760
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc91432g00001 760 Hamap Elongation factor G [fusA]. 68 754 IPR004540 GO:0003746|GO:0005525|GO:0006414
Stsc91432g00001 760 Pfam Elongation factor Tu domain 2 386 452 IPR004161 GO:0005525
Stsc91432g00001 760 FunFam Elongation factor G 667 737 - -
Stsc91432g00001 760 Pfam Elongation factor G, domain IV 540 660 IPR005517 GO:0005525
Stsc91432g00001 760 Gene3D Translation factors 354 471 - -
Stsc91432g00001 760 FunFam Elongation factor G 546 683 - -
Stsc91432g00001 760 SUPERFAMILY Translation proteins 311 463 IPR009000 -
Stsc91432g00001 760 CDD mtEFG1_C 666 743 IPR035649 -
Stsc91432g00001 760 Gene3D - 64 349 IPR027417 -
Stsc91432g00001 760 PRINTS GTP-binding elongation factor signature 159 170 IPR000795 GO:0003924|GO:0005525
Stsc91432g00001 760 PRINTS GTP-binding elongation factor signature 123 131 IPR000795 GO:0003924|GO:0005525
Stsc91432g00001 760 PRINTS GTP-binding elongation factor signature 143 153 IPR000795 GO:0003924|GO:0005525
Stsc91432g00001 760 PRINTS GTP-binding elongation factor signature 195 204 IPR000795 GO:0003924|GO:0005525
Stsc91432g00001 760 PRINTS GTP-binding elongation factor signature 74 87 IPR000795 GO:0003924|GO:0005525
Stsc91432g00001 760 CDD EFG_mtEFG1_IV 544 659 IPR005517 GO:0005525
Stsc91432g00001 760 Pfam Elongation Factor G, domain III 465 539 IPR041095 -
Stsc91432g00001 760 SUPERFAMILY EF-G C-terminal domain-like 463 540 IPR035647 -
Stsc91432g00001 760 FunFam Elongation factor G, mitochondrial 63 350 - -
Stsc91432g00001 760 Pfam Elongation factor Tu GTP binding domain 71 344 IPR000795 GO:0003924|GO:0005525
Stsc91432g00001 760 CDD mtEFG1_II_like 373 453 - -
Stsc91432g00001 760 Gene3D Elongation Factor G (Translational Gtpase), domain 3 472 545 - -
Stsc91432g00001 760 Pfam Elongation factor G C-terminus 664 749 IPR000640 -
Stsc91432g00001 760 CDD EF-G 74 346 - -
Stsc91432g00001 760 SUPERFAMILY Ribosomal protein S5 domain 2-like 540 662 IPR020568 -
Stsc91432g00001 760 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 69 344 IPR027417 -
Stsc91432g00001 760 Gene3D - 667 737 - -
Stsc91432g00001 760 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 70 347 IPR000795 GO:0003924|GO:0005525
Stsc91432g00001 760 SUPERFAMILY EF-G C-terminal domain-like 663 755 IPR035647 -
Stsc91432g00001 760 NCBIfam small GTP-binding protein domain 72 244 IPR005225 GO:0005525
Stsc91432g00001 760 SMART EFG_IV_2 541 661 IPR005517 GO:0005525
Stsc91432g00001 760 NCBIfam elongation factor G 68 755 IPR004540 GO:0003746|GO:0005525|GO:0006414
Stsc91432g00001 760 PANTHER ELONGATION FACTOR G, MITOCHONDRIAL 4 753 - -
Stsc91432g00001 760 Gene3D - 546 751 IPR014721 -
Stsc91432g00001 760 SMART EFG_C_a 663 750 IPR000640 -
Stsc91432g00001 760 FunFam Elongation factor G, mitochondrial 355 468 - -
Stsc91432g00001 760 FunFam Elongation factor G 469 545 - -
Stsc91432g00001 760 CDD EFG_III 466 541 IPR009022 -
Stsc91432g00001 760 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 116 131 IPR031157 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc91432g00001 Stsc-Chr91432 2850 16298 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc91432g00001 388 548 Eukaryotic Initiation Factors Gene Family AT3G22980 24.719 4.47e-08 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc91432g00001 K02355 - gmx:100783315 1372.84