Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc91423g00001 ATGAGCAACATAAGCTTGGTAGAGGCAAGGCTTCCACCAGGGTTCAGATTTCATCCAAAAGATGAAGAGCTTGTTTGTGATTACTTGATGAAGAAGCTCACAAACAATGAATCCCTTCTCATGATTGATGTTGACCTCAACAAGTGTGAGCCATGGGATATTCCTGAAACAGCATGTGTGGGAGGGAAGGAGTGGTACTTCTATACACAGAGAGACAGAAAGTATGCAACGGGGCTCCGTACAAACAGAGCAACGGCTTCAGGGTATTGGAAGGCCACTGGCAAGGACAGGCCTATCCTTAGGAAGGGCAGCCTTGTTGGCATGAGAAAGACTCTGGTCTTCTACCAAGGAAGGGCTCCCAAGGGCAGAAAGACTGAGTGGGTTATGCATGAGTTTCGCATTGAAGGTCCTCTTGGTCCTCCTAATAAGACTTCTTCCAAGGAGGATTGGGTGTTATGTAGGGTGTTCTACAAGAACAGAGAAGTTGGTGGCAAACCTAATAATAATAGCATGGGAAGCTGCTATGATGACACAGGCTCTTCATCTCTTCCACCATTAATGGATTCTTACATCAGCTTTGACCAACAACAACAACAACCTGACTATGAGCAAGTGCCCTGCTTCTCCATTTTCTCTCATCACTCCCAAACAAGCCCTATTTTCAACCACATAATGGAGCCTAAGTTATTCCCTACCAGTAACATCAACAATAATGCAAATGCAACTTTATATGGTGGTGGAGGAGGAACTACTACTACTACTACTACAACACCCAATTTGGGTTCTTGCTTAGACCCTTTTTCATGTGATAGGAAAGTATTGAAAGCTGTTTTGAGTCAGCTCACAAATATGGAAAGAAACATACCTAATAATAATAATAACACCACAAATAATAGTCTAAAAGGGTCACCAAGCTTAGGAGAAGGTAGTTCTGAGAGTTACTTATCTGAGGTTGCCATGCCCAACTTGTGGAACAATTATTCATAA 987 0.4286 MSNISLVEARLPPGFRFHPKDEELVCDYLMKKLTNNESLLMIDVDLNKCEPWDIPETACVGGKEWYFYTQRDRKYATGLRTNRATASGYWKATGKDRPILRKGSLVGMRKTLVFYQGRAPKGRKTEWVMHEFRIEGPLGPPNKTSSKEDWVLCRVFYKNREVGGKPNNNSMGSCYDDTGSSSLPPLMDSYISFDQQQQQPDYEQVPCFSIFSHHSQTSPIFNHIMEPKLFPTSNINNNANATLYGGGGGTTTTTTTTPNLGSCLDPFSCDRKVLKAVLSQLTNMERNIPNNNNNTTNNSLKGSPSLGEGSSESYLSEVAMPNLWNNYS 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc91423g00001 328 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 9 241 - -
Stsc91423g00001 328 SUPERFAMILY NAC domain 2 159 IPR036093 GO:0003677|GO:0006355
Stsc91423g00001 328 MobiDBLite consensus disorder prediction 285 313 - -
Stsc91423g00001 328 FunFam NAC domain-containing protein 100-like 20 162 - -
Stsc91423g00001 328 Gene3D NAC domain 20 163 IPR036093 GO:0003677|GO:0006355
Stsc91423g00001 328 Pfam No apical meristem (NAM) protein 12 134 IPR003441 GO:0003677|GO:0006355
Stsc91423g00001 328 ProSiteProfiles NAC domain profile. 11 158 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc91423g00001 Stsc-Chr91423 17671 23832 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc91423g00001 2 325 NAC Transcription Factor Family AT1G56010 57.647 9.30e-123 353
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Stsc91423g00001 NAM 2e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc91423g00001 - - ahf:112703413 544.273