Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc91422g00002 ATGGCATCTGGTGGACGAGGAAGAGGAAGAGGACGAGACCAGAGAGGAAATGATAGAAACATACCGATGGATAATCAGGCCGAGTTCCTGGCGACTATGACAAATCTAGCCAATACTATACAAGCAGGTGTTACACACCCAATGTCATGGATTTGGAAGAAAGTCACAGTGGGAGCTACTACATATGAGTCTAATAATAAGGAGAAAGAGAAAACCAGTTATAATAAAAAGGCTTTGCTTTGTTCTGTTTTTTCTTCTGCATTTAACCTTATTCTATGTCTCTTTAATTACTTCTATTGGTATAGAAGTGGTTGGTCAGAAGAAAAGCTTGTGACTCTCTTGGATTTGGCACTCAAAGCTCTTGCTTGGGGTGTTGTTGCTGTTTGCTTACACAAAGGTTTCATCATCTTCTTCTTCTCCTCCCGTTCAGACATTGTTCTTGTTTATGCAAAACATGTGGCTTTACCAGCCCCTTACTTAGTTTCTGATGTAGTTTCAGCTTGTGTGGGTTTATTCTTCTGTTACTTTGTGTGTTTTGTTAAGAATGAGTGTGAATTTAGCACTGTTGAGGAGCCTCTATTGAATGGTGATGCCCATGTTAGTGATAATAAGAAAGGGGCTGAAACTGTTACCCCTTATTCAAATGCTGGAATTTTCAGCATTCTTACATTCTCTTGGGTTGGTCCTCTTATTGCTGTTGGCAATAAGAAGACCTTAGACCTTGAGGATGTGCCACAGCTAGATAGCAGAGATAGTGTCATTGGAGCCTTTCCGAAATTTAGAGAGAAGGTGGAGGCAGATTGTGGTGCAGTTAACAACGTGACCACAATTAAGTTGGTGAAGTTGTTGATAATCTCGGAGTGGAAGGAGATTGTCTTCACAGCAGTTCTTGCATTGTTGAACACTTTGGCTTCTTATGTTGGTCCTTATCTTATTGATGCTTTTGTCCAATACCTTGATGGACAAAGGCTATATGAGAATCAGGGTTATGTTTTGGTTTCAATATTTTTCTTGGCAAAGATTGTTGAGTGTTTGTCGCAGAGGCATTGGTTCTTTAGGGTGCAGCAAGTCGGACTTCGAATGCGTGCACTGCTTGTGACCATGATCTATAATAAAGCATTGACGCTTTCATGTCAATCAAGGCAAGGCCATACTTCCGGGGAAGTCATCAACTTCATGTCGGTTGATGCTGATAGAATTGGTGTCTTCAGTTGGTACATTCATGATTTGTGGATGGTAGCTCTGCAAATTTCTTTAGCCTTGGTGATTTTGTATAAAAGCCTTGGCCTTGCTTCGATTGCTGCATTTGTTGCAACCATTGTTGTAATGTTGGCAAATGTCCCTTTGGGAACATTGCAAGAAAAATATCAGGATAAGTTGATGGAGTCAAAAGATACAAGAATGAAGACAACTTCGGAGATTCTCAGGAACATGAGGATTCTCAAGCTTCAAGGGTGGGAGATGAAGTTTCTTGCTAAGATAACTGAACTCAGGAAAACTGAGCAGGGCTGGTTAAAGAAATTTGTTTATACATCAGCCATGACAACATTTGTGTTTTGGGGTGCTCCAACATTTGTGTCTGTGGCTACTTTTGGTACTTGCATGCTTATGGGGATTCCACTTGAATCTGGGAAGATCTTGTCTGCACTTGCTACGTTCCGGATTCTTCAAGAGCCTATATATAGTCTTCCAGATACAATTTCAATGATAGCACAAACAAAGGTTTCTGTTGATAGGATCTCATCATTCCTTCGTCTTGATGACTTGCAATCCGATGTTGTAGAGAGGCTTCCCCGGGGTTCTTCTGATAAAGCAATTGAAGTGGTTGATGGAAATTTCTCTTGGGATTTATCTTCCCCGAATACAACATTGAAGAACATAAACCTCACAGTTCTACATGGCATGAGGGTTGCTGTTTGTGGTACGGTAGGATCAGGCAAATCTACATTACTTTCTTGTATACTAGGAGAGGTGCCAAAGAAATCAGGCATTCTAAAGGTGTGTGGAACAAAGGCCTATGTTGCTCAATCGCCATGGATTCAAAGCGGAAAGATAGAGGATAACATACTGTTTGGAAATGAGATGGATAGGGAAAGGTATGAGAAGGTACTTGAATCTTGTTCCTTGAAGAAGGATCTAGAAGTTTTGTCCTTCGGTGATCAGACAGTTATAGGAGAACGCGGTATAAACTTGAGTGGAGGACAGAAACAAAGAATACAAATTGCTCGTGCCCTTTACCAAGATGCTGATATATACTTGTTTGATGATCCTTTCAGTGCTGTGGATGCTCATACAGGTTCTCATCTTTTTAAGGAATGCTTGCTTGGCCAATTAAGTTCAAAGACAGTAGTATATGTCACTCATCAAGTAGAGTTCTTGCCAGCTGCTGATCTTATTTTGGTCATGAAAGATGGGAAGATTACTCAATGTGGAAAGTATGATGACTTGCTTAACAGTGGGACTGATTTTATGGAACTTGTTGGTGCACACAAGAAAGCGTTGTCTACACTCGAGTCATTGGATGGAGGAGCAACATCAAATGAAATAAGCACCTCGGAAGATGGAAGTGTTTCTAGTGCTAATGGTGTTAAAGAAAAAGAGGCAAACGGATATGATCTAAATGGTAAAACAGAAGAGAAAGATGAGCCTAAAGGCCAGCTTGTTCAGGAAGAAGAAAGGGAGAAAGGTAGAGTTGGGTTTTCGGTCTATTGGAGATACATCACGACTGCGTATGGAGGAGCTCTAGTTCCTTTCATATTGCTGTCTCAGATTCTCTTTCAAGTTCTCCAAATTGGAAGCAACTATTGGATGGCTTGGGCAACTCCAGTCTCACAAGATGTGGAGCCACCTGTTCCAGGAACAACTCTTTTGGTTGTTTATGTTGCTTTGGCCATTGGAAGTGCATTTTGCATCCTTTTTAGAGCAATGTTTCTTGCCACGGCTGGTTACAAGACAGCTACTATACTTTTCAACAAAATGCATTTCTGCATCTTCCGCGCCCCAATGTCATTTTTCGATTCCACACCAAGTGGTCGAATCCTTAACAGAGCTTCTACTGACCAAAGTGCAGTAGATACTGATATTCCTTATCAAATTGGATCATTCGCCTTCTCCATGATCCAGCTTGTGGGAATTATAGCAGTGATGTCCCAAGTTGCATGGCAAGTTTTCATTGTATTCATACCAGTAATAGCAGCAAGCATATGGTATCAGCAATATTATATACCATCGGCTCGAGAACTATCACGATTAGTCGGAGTATGCAAAGCTCCAATCATTCAACACTTTGCTGAAACAATTTCTGGTACAACAACCATTAGAAGCTTTGATCAGCAGTCTAGATTTCAGGAAACAAATATGAAATTGACTGACGGTTATTCTCGGCCGAAGTTCAATATTGCCGGTGCTATGGAATGGTTGTGCTTTCGATTAGATATGTTGTCTTCTATCACATTTGCCTTCTCCTTGATATTCTTGATATCTATTCCACAAGGAGTCATAGATCCAGGCATTGCTGGTTTGGCTGTTACATATGGACTTAATTTAAACATGATACAAGCTTGGGTGATATGGAATCTTTGCAACTTGGAGAACAAGATTATATCAGTAGAAAGAATACTTCAGTACACTTCCATTCCTAGTGAGCCTCCCCTTGTTGTCGAAGAAAACCGACCAGCTCCTTCTTGGCCGTCAAGTGGCGAGGTTGATATACATAACTTGCAGGTTCGTTATGCTCCACACCTTCCACTTGTGTTGCGTGGCCTCACGTGCACGTTTCGCGGAGGACTCAAAACTGGGATTGTTGGGAGAACAGGAAGTGGTAAATCAACTCTCATTCAAACACTCTTCCGAATTGTCGAGCCAGCTACCGGAGAAGTTATGATTGATGGCATCAACATCTCTTCGATAGGACTTCATGATTTGAGGTCTAGGCTAAGCATTATTCCTCAAGATCCAACCATGTTTGAAGGAACAGTCAGAAATAATCTTGACCCTCTAGAGGAATACACAGATGAACAAATATGGGAGGCTTTGGACAAGTGTCAGCTTGGTGATGAAGTTAGACAAAAAGAAGGAAAGTTAGACTCCCCAGGTTAG 4098 0.4122 MASGGRGRGRGRDQRGNDRNIPMDNQAEFLATMTNLANTIQAGVTHPMSWIWKKVTVGATTYESNNKEKEKTSYNKKALLCSVFSSAFNLILCLFNYFYWYRSGWSEEKLVTLLDLALKALAWGVVAVCLHKGFIIFFFSSRSDIVLVYAKHVALPAPYLVSDVVSACVGLFFCYFVCFVKNECEFSTVEEPLLNGDAHVSDNKKGAETVTPYSNAGIFSILTFSWVGPLIAVGNKKTLDLEDVPQLDSRDSVIGAFPKFREKVEADCGAVNNVTTIKLVKLLIISEWKEIVFTAVLALLNTLASYVGPYLIDAFVQYLDGQRLYENQGYVLVSIFFLAKIVECLSQRHWFFRVQQVGLRMRALLVTMIYNKALTLSCQSRQGHTSGEVINFMSVDADRIGVFSWYIHDLWMVALQISLALVILYKSLGLASIAAFVATIVVMLANVPLGTLQEKYQDKLMESKDTRMKTTSEILRNMRILKLQGWEMKFLAKITELRKTEQGWLKKFVYTSAMTTFVFWGAPTFVSVATFGTCMLMGIPLESGKILSALATFRILQEPIYSLPDTISMIAQTKVSVDRISSFLRLDDLQSDVVERLPRGSSDKAIEVVDGNFSWDLSSPNTTLKNINLTVLHGMRVAVCGTVGSGKSTLLSCILGEVPKKSGILKVCGTKAYVAQSPWIQSGKIEDNILFGNEMDRERYEKVLESCSLKKDLEVLSFGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKECLLGQLSSKTVVYVTHQVEFLPAADLILVMKDGKITQCGKYDDLLNSGTDFMELVGAHKKALSTLESLDGGATSNEISTSEDGSVSSANGVKEKEANGYDLNGKTEEKDEPKGQLVQEEEREKGRVGFSVYWRYITTAYGGALVPFILLSQILFQVLQIGSNYWMAWATPVSQDVEPPVPGTTLLVVYVALAIGSAFCILFRAMFLATAGYKTATILFNKMHFCIFRAPMSFFDSTPSGRILNRASTDQSAVDTDIPYQIGSFAFSMIQLVGIIAVMSQVAWQVFIVFIPVIAASIWYQQYYIPSARELSRLVGVCKAPIIQHFAETISGTTTIRSFDQQSRFQETNMKLTDGYSRPKFNIAGAMEWLCFRLDMLSSITFAFSLIFLISIPQGVIDPGIAGLAVTYGLNLNMIQAWVIWNLCNLENKIISVERILQYTSIPSEPPLVVEENRPAPSWPSSGEVDIHNLQVRYAPHLPLVLRGLTCTFRGGLKTGIVGRTGSGKSTLIQTLFRIVEPATGEVMIDGINISSIGLHDLRSRLSIIPQDPTMFEGTVRNNLDPLEEYTDEQIWEALDKCQLGDEVRQKEGKLDSPG 1365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc91422g00002 1365 FunFam ABC transporter C family member 10 275 588 - -
Stsc91422g00002 1365 CDD ABC_6TM_ABCC_D1 293 580 IPR044746 GO:0140359
Stsc91422g00002 1365 MobiDBLite consensus disorder prediction 1 22 - -
Stsc91422g00002 1365 CDD ABCC_MRP_domain1 606 806 - -
Stsc91422g00002 1365 Gene3D - 587 841 IPR027417 -
Stsc91422g00002 1365 Gene3D - 1218 1365 IPR027417 -
Stsc91422g00002 1365 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 918 1198 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc91422g00002 1365 FunFam ABC transporter C family member 5 879 1216 - -
Stsc91422g00002 1365 Pfam ABC transporter 1253 1352 IPR003439 GO:0005524
Stsc91422g00002 1365 SUPERFAMILY ABC transporter transmembrane region 915 1217 IPR036640 GO:0005524|GO:0016020
Stsc91422g00002 1365 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 603 828 IPR027417 -
Stsc91422g00002 1365 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 213 1350 - -
Stsc91422g00002 1365 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1225 1362 IPR027417 -
Stsc91422g00002 1365 FunFam ABC transporter C family member 5 591 838 - -
Stsc91422g00002 1365 FunFam ABC transporter C family member 9 1219 1365 - -
Stsc91422g00002 1365 ProSitePatterns ABC transporters family signature. 731 745 IPR017871 GO:0005524|GO:0016887
Stsc91422g00002 1365 Gene3D ABC transporter type 1, transmembrane domain 271 586 IPR036640 GO:0005524|GO:0016020
Stsc91422g00002 1365 Gene3D ABC transporter type 1, transmembrane domain 877 1216 IPR036640 GO:0005524|GO:0016020
Stsc91422g00002 1365 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 606 829 IPR003439 GO:0005524
Stsc91422g00002 1365 SMART AAA_5 633 806 IPR003593 GO:0016887
Stsc91422g00002 1365 SMART AAA_5 1261 1346 IPR003593 GO:0016887
Stsc91422g00002 1365 CDD ABC_6TM_ABCC_D2 916 1210 IPR044726 GO:0140359
Stsc91422g00002 1365 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 292 572 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc91422g00002 1365 Pfam ABC transporter 624 758 IPR003439 GO:0005524
Stsc91422g00002 1365 Pfam ABC transporter transmembrane region 293 559 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc91422g00002 1365 Pfam ABC transporter transmembrane region 918 1161 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc91422g00002 1365 SUPERFAMILY ABC transporter transmembrane region 285 585 IPR036640 GO:0005524|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc91422g00002 Stsc-Chr91422 14864 22250 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc91422g00002 606 863 Calmodulin-binding Proteins AT2G36910 30.147 2.40e-24 109
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc91422g00002 - K05666 gmx:100777836 2185.99