Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc91416g00005 ATGGCTCAGACACCACCACCGCCTCAACCAGAACCAGAACTGCCTCCACAACTAGCGCTTGATGATTATGAATTCCAAGAATGGGATGAACAATTTGTGTATGACATGTTGGGAGAAGATGAGGAACTGAACAACCAAGTAGCGGAGGTACTTAAGGAGGCGATTAACTATAAAGAGGGTGATGAGCTGCAGCAACAACAGAACAACCCTTCTGTTCACGAGGAGGAGATGCCCCAGCAACTTAACGATGAAGAGATGCAGCAGGAAGACAACCAACAGTTGCCGGAATCTCCTCCCGTGAACCAGGCGGAGGAAGCTGCGCCCTCCAGATACCGGCAAGGCAGATGGGACCTTGAGGAGCACAGATTATTTCTGAGAGGAAACGAAGATCACCCGGGCGAGTGGGCACATATTGCTGCAAATTATGTTAAAACGAGGAGTATGCAACAAGTTGCGAGTCACGCCCAAAAATACTTTATACATCTTGCTCAACAACAAGAGAAGCCTCCACGACGAGTTCCCAAGGGGAAGAAGAAGAGTATTTTTGACACCACTTTAGATGATGGTGATGATGACCATCAACAACCACCTCATCATGGACATGATGTCCCCTCTCAATCCCTAAACCTTGGCCAAAATATTGATCGTCCTCTTTCTCAATCCCAATCTCAATGTCAACGTCATCTTGATCAGCATCAACAACCACCTCATCATGAGTCTATCCTTGATGTCCCTACTAATCTCCTCAACCTCCAACAGAATATAGTTTCTTCTCCCTCTACTGATACTATCATTTTCCATCATCTACAATCTCATCCTCAGTTTCAGTATCAGCCTCAGCTGCCTCAGTTTCAGTTTCAACGACCTCAGCATCCTCTGCTGCCTCCGCTTCCTCAGCTTCTACAGCTACCTCCGTCATCTACATTTGAGTTTCAACCTCGGCAGCATCTTCCTCCACCTCCGTTTGAGCTTCAATCTCAGCAGACTCTACCTCCACTGTTTCAGTCTCTGCCTCCGCTTCCGTCTCCCTTTGAGTCTGATCACTTTGATCGTGGGCAGCCTCTGTCTTAG 1071 0.4753 MAQTPPPPQPEPELPPQLALDDYEFQEWDEQFVYDMLGEDEELNNQVAEVLKEAINYKEGDELQQQQNNPSVHEEEMPQQLNDEEMQQEDNQQLPESPPVNQAEEAAPSRYRQGRWDLEEHRLFLRGNEDHPGEWAHIAANYVKTRSMQQVASHAQKYFIHLAQQQEKPPRRVPKGKKKSIFDTTLDDGDDDHQQPPHHGHDVPSQSLNLGQNIDRPLSQSQSQCQRHLDQHQQPPHHESILDVPTNLLNLQQNIVSSPSTDTIIFHHLQSHPQFQYQPQLPQFQFQRPQHPLLPPLPQLLQLPPSSTFEFQPRQHLPPPPFELQSQQTLPPLFQSLPPLPSPFESDHFDRGQPLS 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc91416g00005 356 CDD SANT 115 159 IPR001005 -
Stsc91416g00005 356 MobiDBLite consensus disorder prediction 58 114 - -
Stsc91416g00005 356 MobiDBLite consensus disorder prediction 165 240 - -
Stsc91416g00005 356 MobiDBLite consensus disorder prediction 200 230 - -
Stsc91416g00005 356 MobiDBLite consensus disorder prediction 309 356 - -
Stsc91416g00005 356 ProSiteProfiles SANT domain profile. 119 163 IPR017884 -
Stsc91416g00005 356 MobiDBLite consensus disorder prediction 84 99 - -
Stsc91416g00005 356 Pfam Myb-like DNA-binding domain 114 159 IPR001005 -
Stsc91416g00005 356 Gene3D - 115 162 - -
Stsc91416g00005 356 SUPERFAMILY Homeodomain-like 113 163 IPR009057 -
Stsc91416g00005 356 SMART sant 112 161 IPR001005 -
Stsc91416g00005 356 MobiDBLite consensus disorder prediction 168 199 - -
Stsc91416g00005 356 PANTHER TRANSCRIPTION FACTOR KUA1 84 269 - -
Stsc91416g00005 356 MobiDBLite consensus disorder prediction 60 76 - -
Stsc91416g00005 356 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 112 163 IPR017930 -
Stsc91416g00005 356 NCBIfam myb-like DNA-binding domain, SHAQKYF class 115 161 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc91416g00005 Stsc-Chr91416 22425 24454 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Stsc91416g00005 Myb_DNA-binding 3.1e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc91416g00005 - - pvu:PHAVU_003G267300g 71.6329