Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc91406g00002 ATGACCACAGCCGTTACGGCCTCCGAGATCCTCCGTCACACAACCGCCTTCCTCTCCGACGTCATTTCCAACCGCGATCTCCGCCACCGCCTCATCTCCATCCTCCTCCGAGACACCACCTCCGCCGCAATTTCCGACGAATCTGCCGTGAAACTCGCCCGAGATACTCTCGAAACCGCGATCACGCTCTCCAACGTCGCCTCCCGCTCCTGTTCCCTTTCCCTTGCCGAGAAGCTCCTCCTCCCTCTCTCCGACCACCACGACCACCCGCTTCCTTTCTTCCTCCTCTCTCTCGTTCGAACCCTCCAGAATCGCCACCTCGATGCCGCCGTGTCTCTCCTCCGTATATTCCGTTCTAACCCTTCCCTCGCCCGATCGGAGATCGCGCCGGTCCTCTACGACCGTCTGTTCTCCCCGCAGCTACTGTCCGTGTTCCGGTTTTTGCTTGATCGGAGAGCGCAGATCCTCTCACCATCTTCGGATTTGGAAGACGCTGCTACTCACTCGCTGTCGAAGGTGAGCGAGGAGCAGGCGTCGAAACTGAGGGAGCTGGAGAAGGAGTACGAGGAGATTCTCGATGAGAATTGCAGGGTTGTTGCGGCGCGTTTCGAAGAGGGTTTGGCCAGCGAGAATCAAAATGCGTCCATCAGTCCGCCGTTGCTCGCGCATAAGGGCTCCGCGGAAGGCGGCGGAGCGGAGAACAATGTGGAGGAGGATGAGGAGGAGCAGTTAGTGATGGAGGAAACTGAAATAACCGCCTTGAAGAGCGGACACTACGATAATCCAATATGGAGCGAAAGGGAAGAAGCATCCATTGAGTTTTTGAGCAGTGGTTCTTGCAGCAATTCCTCGTATGCACCGTTTTATCCACGAAGAGTCTCTCCCACAATCCTCAAACCCCGAAACACTTCACAAAACTTGGCACCACTCGCTGATGAAACCGAGTCTTCAAAGGTTGACAAGAGTTTGACTAGTTCCTCCTCAGAATCTGAAGCAGAAAGAGAGATTACTGTTAGTTCAACTCCGATGAAGACACCGAATTCGGTTAGAACCGGAAACAAATCCTTGTCTACTCCCAAAATCCTTAAACCACAAAAATCTGCAAGATGTTTGAAACCACCACCCTATTTAATTAACTTAGCTGATGAGGCAGAATCTTCTTTGGATAAGAATTTGCCTTGGTCAAATTCAGAATCTGAAGCAGAAAGTCAGGAAAAGGGCGAAAAGATAACACAACTGGAGCCTCAGAAATTCCAAACCCCAAAACAGAAGAAAAATATTTGTTCAGGATCCATGTGTTCTCCAGATTGTAACATGGAAGATGAACATATGCCTCCAGAGGACTTTGTGTGTCCATTAACAAGTAACCTATTTGATGATCCTGTGACCCTTGAGACAGGACACACATTTGAACGCCATGCTATTGAAGAATGGCTTAAAAGGGGCAACTTAACTTGTCCCATCACTCGAAAGAAGCTGCGAAAGACACGCATACCGAAAACAAATCATGTGCTCAAACAAATAATATCAAGCTGGAAAGAACAAAATCTCAATTCAGTAGCCGAAATGCCATGTGACAATCCACGTGAAGATACTGAGCCAAAACTTGAGTCTTCACCTTCTCCTAACAGTGTCATATCAGAGGGAACGCTCGAGGGAATGATGAGTGAGTTGCGCAAAGCAATCAACAAACTGTATATGTCAGAGGTTCTTGAGGAATCTGAAATGGCTGTGCTTCAAATTGAGAAGATTTGGAGTGAATTGAACCTAATAGTTGTTGATATCCATAGTATGCTATCAAAACCTCCTATCATCAATGGATTCATGGGGGTGCTTCTTAACTCTGTTGATCCAAAAGTGTTGCAAGCAGCAGTTTTCTTGTTAACTGAGATGGGTTGTGGAGATAGTAGTGTTATTCAAACGCTTAGCCGTGTCGACACTGATGTAGAATGGATCATGACTCTTTTCAAGAAAGGTGTAAAAGAAGCTGTTGTTTTGATGTATCTCCTGAAACCTTCCACTATTATTCTTGCAGATACGGCAACAGTGGAGGCTCTCATTGCAGTTGCAAATATGAAAGAGGAAGAATTTCTAAGTATGTGTTTGAGTCCCAAAACAGCTGCAGTGCTTTTACTTGCACAGGTTATTGGAAGCAGTGAAGAGAGCATCACATCTTCAGTTGCTCAGGCTGTGTTATCCGAAAGAGCAATCGAAGCTATAGTAGGCAGTTTGGGAGCAGAGTGGGCAGAGGAGAGGATTGCTGCGATTGAGATCTTGTTAAAATGCATGCAAGAAGATGGTAATTGCAGGAATATCATTGCTGATAAGGCTCAATTATCTACTTTCTTGGAAAGCCTTGTAGGTGCAACTGAGGGAGAACTTTTCAAGATAGTTAAATTTTTATCTGAATTGGTAAAGCTGAATAGGAGAACACTCAGTGAACAAATCCTTCACATTATAAAGGAAGAAGGCCCTTTAAGCACAATGCACACTCTCCTCATTTCTCTGCAGACAGCTCATAAATTCCATTTTCCAGTAGTGGCTGGCTTCTTACTCCAACTTGATCTTCTGGTGGAGCAAACAAAGATGAGCATATACTCTGAAGAGGCAATAGATACTCTTATCTCATGCTTGAGAAAGACTGATTACCCTGCTGTCCAATTAGAAGCTGCCAAGATAATCGCGTCTTTGCAAGGGAGGTTCAACTATGCCGGAAAGTCTCTTAACCGAGAAGTCCTCCTCGAACGTGCTGGTCTTGACAGGAGCTACAACAATTTTCTACAGATGGACCAGATCAGCAACTTCAACGAAGGAATTGAAGCATCTATGAAAGAAGAGAATGTAGCTGAGGATTGGGAAAGAAGAGTTGCATCAGTTCTAGTTAGCCATGACTGTGGTTTACTTTTTGAGGCTTTAACAGATGGGTTGAAGAGCCAGAATGAAGAACTACGTTCTTCATGCTTTATATCAGCTACATGGCTCATATACATGCTCACTGTTCTACCAGATACTGGAATACAAGGTGCAGCACGAGTCTTCTTTCTCAAGCAATTCATATTCATATTGAAATCTGCCGAGGAAACTGAAGACAGAATCCTTGCCATGCTTGCTCTTAAGAGCTTTCTTCATTTTGATGATGGCTTACGTGATCTAACTTCACATGCTAACGAGATCCTGAAAGCACTGAGAGAATTAGAGGGGTTCTCCCCCATGGCATCAGAAATTATGAAGGTTTTGGTTGAAGAACCTGAATCTAAAGCAGACATCTGGATTCATAAAGAGCTAACTAAAGTAGATTGTAGTGGGAATGGAGAAGTTCTTTCTATCATTTGCTTTGAAGATAAAATCTTTTCAGGGCATTCAGATGGAACCATTAAGGTGTGGAAAGTAAAGGAAAGCATATTCGATCTCATGCAAGAGATTAAAAAGCATACGAAGGATGTTACAAGCTTGGCAATTTCAGAATCCGGTGAAAGATTATACAGTGGTTCACTTGATAGAACTGTAAAGGTCTGGTCCATTGAAATGGCTGCAATACATCATGTACAAGAATATGATATGAAGGACCACATTCACAATCTAGTTGTGACCAATACTATGTGTTGCTTCACTCCTCATGGAAGTGGCATCAAGGTTAAGTCATGGAATGGGGAATCTAAGTTGTTAAATTCTAATAAACATGTAAAGTGCTTGGCTCTTGTTCAGGGTAAATTATACTGTGGATGCCATGATAGTAGCGTTCAGGAGATTGATTTGGCCACAGGAAAAGTCATCAACATTCAAAGTGGTTCCAAAAAGTTACTTGGGAAAGCAAATCCAATCCATGCACTGAAACTTCATGGTGAATTCATATACACAACTAGCTCTTACTTTGATGGATCTGTCATAAAGATATGGAACAAATGCAACAATCGTATTAGTATGTTTGGATCACTGCAAAGTTCATTGGAAGTGAGAGCTATGGCAGTGAGTTCAGAACTAATTTATTTGGGGTGCAAGGGAGGAGCTGTGGAAATTTGGGATACAAAAAAACACAACAGAATTAACACATTGCACACCGGATCCAATTGCAGGGTTCTTTGCATGGCTTTCAATACCAATGAGGACATTTTGGTAATTGGAACTTCCGATGGCCAAATTCAGGTATGGGGTGTCAAGTAA 4161 0.4393 MTTAVTASEILRHTTAFLSDVISNRDLRHRLISILLRDTTSAAISDESAVKLARDTLETAITLSNVASRSCSLSLAEKLLLPLSDHHDHPLPFFLLSLVRTLQNRHLDAAVSLLRIFRSNPSLARSEIAPVLYDRLFSPQLLSVFRFLLDRRAQILSPSSDLEDAATHSLSKVSEEQASKLRELEKEYEEILDENCRVVAARFEEGLASENQNASISPPLLAHKGSAEGGGAENNVEEDEEEQLVMEETEITALKSGHYDNPIWSEREEASIEFLSSGSCSNSSYAPFYPRRVSPTILKPRNTSQNLAPLADETESSKVDKSLTSSSSESEAEREITVSSTPMKTPNSVRTGNKSLSTPKILKPQKSARCLKPPPYLINLADEAESSLDKNLPWSNSESEAESQEKGEKITQLEPQKFQTPKQKKNICSGSMCSPDCNMEDEHMPPEDFVCPLTSNLFDDPVTLETGHTFERHAIEEWLKRGNLTCPITRKKLRKTRIPKTNHVLKQIISSWKEQNLNSVAEMPCDNPREDTEPKLESSPSPNSVISEGTLEGMMSELRKAINKLYMSEVLEESEMAVLQIEKIWSELNLIVVDIHSMLSKPPIINGFMGVLLNSVDPKVLQAAVFLLTEMGCGDSSVIQTLSRVDTDVEWIMTLFKKGVKEAVVLMYLLKPSTIILADTATVEALIAVANMKEEEFLSMCLSPKTAAVLLLAQVIGSSEESITSSVAQAVLSERAIEAIVGSLGAEWAEERIAAIEILLKCMQEDGNCRNIIADKAQLSTFLESLVGATEGELFKIVKFLSELVKLNRRTLSEQILHIIKEEGPLSTMHTLLISLQTAHKFHFPVVAGFLLQLDLLVEQTKMSIYSEEAIDTLISCLRKTDYPAVQLEAAKIIASLQGRFNYAGKSLNREVLLERAGLDRSYNNFLQMDQISNFNEGIEASMKEENVAEDWERRVASVLVSHDCGLLFEALTDGLKSQNEELRSSCFISATWLIYMLTVLPDTGIQGAARVFFLKQFIFILKSAEETEDRILAMLALKSFLHFDDGLRDLTSHANEILKALRELEGFSPMASEIMKVLVEEPESKADIWIHKELTKVDCSGNGEVLSIICFEDKIFSGHSDGTIKVWKVKESIFDLMQEIKKHTKDVTSLAISESGERLYSGSLDRTVKVWSIEMAAIHHVQEYDMKDHIHNLVVTNTMCCFTPHGSGIKVKSWNGESKLLNSNKHVKCLALVQGKLYCGCHDSSVQEIDLATGKVINIQSGSKKLLGKANPIHALKLHGEFIYTTSSYFDGSVIKIWNKCNNRISMFGSLQSSLEVRAMAVSSELIYLGCKGGAVEIWDTKKHNRINTLHTGSNCRVLCMAFNTNEDILVIGTSDGQIQVWGVK 1386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc91406g00002 1386 SUPERFAMILY ARM repeat 602 1060 IPR016024 -
Stsc91406g00002 1386 MobiDBLite consensus disorder prediction 320 359 - -
Stsc91406g00002 1386 MobiDBLite consensus disorder prediction 389 413 - -
Stsc91406g00002 1386 ProSiteProfiles U-box domain profile. 444 519 IPR003613 GO:0004842|GO:0016567
Stsc91406g00002 1386 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1352 1386 - -
Stsc91406g00002 1386 Gene3D - 1092 1186 IPR015943 GO:0005515
Stsc91406g00002 1386 MobiDBLite consensus disorder prediction 523 548 - -
Stsc91406g00002 1386 MobiDBLite consensus disorder prediction 214 245 - -
Stsc91406g00002 1386 SMART Ubox_2 448 512 IPR003613 GO:0004842|GO:0016567
Stsc91406g00002 1386 Coils Coil 174 194 - -
Stsc91406g00002 1386 MobiDBLite consensus disorder prediction 297 312 - -
Stsc91406g00002 1386 ProSiteProfiles Trp-Asp (WD) repeats profile. 1141 1175 IPR001680 GO:0005515
Stsc91406g00002 1386 CDD RING-Ubox_PUB 446 496 IPR045210 -
Stsc91406g00002 1386 MobiDBLite consensus disorder prediction 295 359 - -
Stsc91406g00002 1386 ProSiteProfiles Trp-Asp (WD) repeats profile. 1352 1386 IPR001680 GO:0005515
Stsc91406g00002 1386 SUPERFAMILY WD40 repeat-like 1103 1385 IPR036322 GO:0005515
Stsc91406g00002 1386 Pfam U-box domain 446 516 IPR003613 GO:0004842|GO:0016567
Stsc91406g00002 1386 Gene3D - 557 837 IPR011989 -
Stsc91406g00002 1386 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1141 1175 - -
Stsc91406g00002 1386 SMART WD40_4 1305 1341 IPR001680 GO:0005515
Stsc91406g00002 1386 SMART WD40_4 1344 1384 IPR001680 GO:0005515
Stsc91406g00002 1386 SMART WD40_4 1254 1300 IPR001680 GO:0005515
Stsc91406g00002 1386 SMART WD40_4 1208 1251 IPR001680 GO:0005515
Stsc91406g00002 1386 SMART WD40_4 1134 1173 IPR001680 GO:0005515
Stsc91406g00002 1386 SMART WD40_4 1092 1129 IPR001680 GO:0005515
Stsc91406g00002 1386 Pfam WD domain, G-beta repeat 1352 1383 IPR001680 GO:0005515
Stsc91406g00002 1386 Pfam WD domain, G-beta repeat 1138 1173 IPR001680 GO:0005515
Stsc91406g00002 1386 Gene3D - 1187 1386 IPR015943 GO:0005515
Stsc91406g00002 1386 SUPERFAMILY RING/U-box 444 516 - -
Stsc91406g00002 1386 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 3 1385 - -
Stsc91406g00002 1386 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 433 523 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc91406g00002 Stsc-Chr91406 17392 23714 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc91406g00002 434 584 U-box Gene Family AT1G71020 33.553 6.24e-15 77.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc91406g00002 - - lang:109342256 1503.8