Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc91401g00002 ATGCCAATTAACCATCATAATTTAAGACACACAGCCACCCATAAACCACCCTCAACCATCCTCTCATGTCTCTGTCCCCCCTCCCTCTGTGACCCCTCACCGCCGCCCCTCCCGCCCTTAGCCACTTTTTTGTTCCGCCGTATTCGCCTCCGCGTTCTAGCAGTCACGAACTCGTGTCCAGCTTTCGCGCCCCAGCAGCCTTCCGCTGTGCCTCCGACATCCCTCCGCCATGCCTCCTCCAGCCTTACACAAATTCTCCTAATTAGGGATAACTTGCGAAACTTCAGTGTTAGCAATGGCACTCAAGGGTCCAAAGAAAAATCTAGGGTTCCCAGAATCAAAGCTGCTCCTGCTGGTATTGCTACCCCAGTTGCTGCTTGTAATGTCGTTGTTGCTGCTGGGGAAGATGCTACTCCTGCCACTAATGTGACTCATCAGCCTGATCCTTCTTCTGTTGCTGTGGGTGATTCCTCTCAATATGAAGAATATGCCAAGAATCCTCCGCGGTACAATGCAATGGTTCTTGAAGCGATGTCAGCTCTGAAAGATGCTTATGGATCTGACTTGAATGCCATTGTTAGTTTTATTGAGGCATTGCATATAAATGCTGAGAACGGAGATGTGATAGATATATTTATGCATTCTTCATTGCGAAAGGTTGCTTCTGAATTCTTGGTCTACTACAGCCAAGAAATAGTGCATCCATCCACTTTCACATACATCTAA 726 0.478 MPINHHNLRHTATHKPPSTILSCLCPPSLCDPSPPPLPPLATFLFRRIRLRVLAVTNSCPAFAPQQPSAVPPTSLRHASSSLTQILLIRDNLRNFSVSNGTQGSKEKSRVPRIKAAPAGIATPVAACNVVVAAGEDATPATNVTHQPDPSSVAVGDSSQYEEYAKNPPRYNAMVLEAMSALKDAYGSDLNAIVSFIEALHINAENGDVIDIFMHSSLRKVASEFLVYYSQEIVHPSTFTYI 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc91401g00002 241 SUPERFAMILY "Winged helix" DNA-binding domain 166 222 IPR036390 -
Stsc91401g00002 241 MobiDBLite consensus disorder prediction 139 157 - -
Stsc91401g00002 241 MobiDBLite consensus disorder prediction 139 159 - -
Stsc91401g00002 241 Pfam linker histone H1 and H5 family 168 220 IPR005818 GO:0000786|GO:0003677|GO:0006334
Stsc91401g00002 241 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 166 241 IPR005818 GO:0000786|GO:0003677|GO:0006334
Stsc91401g00002 241 PANTHER SINGLE MYB HISTONE 4 89 200 IPR044597 GO:0003691
Stsc91401g00002 241 Gene3D - 163 231 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc91401g00002 Stsc-Chr91401 23970 25862 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc91401g00002 88 197 Single Myb Histone (SMH) Gene Family AT1G17520 40.909 4.38e-13 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc91401g00002 K09422 - gmx:778177 102.834