Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc91397g00003 ATGCTCCAAATTTCAATATTTCTACATTTATTCTTCGTATCTGCAACTGCCTATGGAACCATGGGACCAATCTCTGCATCCTTCGGAAAACGCGACCTCTTCTGCGCCATCGACGCTAGCGGCAATCAGAACATTCTATGCTTCGGAAACAACGTAACTTCGCAACCTCCATCACAATCCAATGCATCTTCTTCCTCTCTACCTTATTTCACCAACCTTCCTCCCATGTCGGCACTTTCCGGGGGCCAAGGTTTCTTCTGTGGCATTCTAGCAAACACTTCACAGCCTTGTTGCTGGCCCGCAGGAAAACCTGCCGCTGATCCACTTCTCGTCCCCCCCGCCTACCGGAACACCGCCTACTCCCGCATTGCCGCCGGAAAGTCCCACGTATGTGCAGTCAGAGGGTCCTACTTCTCCGATCGTGCTTCCGGCAACGTGGATTGCTGGGAAGTCGCTCAGACGCCCAACAACTCCTTCATCGCCAAACAGAGCCTTGCGTTCTACGACCAATCCGTTAGCAACCTGGAGTTTAACGACGTCGTTTCCGGGGAGGATTTCTCTTGCGGCGGCGTTAGGGACGGAGGCCTCCTTTGCTGGGGCCCAAATTCGAAGAATCTCCAAGTTTCCAACGTGTCCGATAGCTTCTCCGTTTTGGCCTCCGGGAAAAACGCGATTTGCGGAGTTTCAAACTCTTCGGGGGAGTTGAAATGCTGGGGCGACCCGAATTCGTATTCTGATCCTGAGTCAGCGGGTCGGGTTGAGATGGTTTCTCTGTCTGCAGGTTCGAAGCATTTCTGCGGGATCAGAAAAGATAGCCATGTTGTGGAATGTTGGGGCGTGTCTGATTCGTCTGTGGTTCCAAAAGGTTATGGCTTTATGGCCATTGCTTCTTCGGATTACACAACTTGTGGGATCAGAGAAGATGATCTTCTGCTTGATTGTTGGGTGGTCAACGCATCAAAGCCTGATTTTGACCCTCCCTTGCAGCTTTCAAGCCCTGGCCTTTGTCGAAACAGGCCTTGCGGTGTTGGGGAGTTTGCTTTTAATGTCAGTGTTCTTAATGAGCCTGATCTCACCAGTTTGTGTGTGAGGCAGGATTTGAAGATTTGTTCACCTTGTGGCTCTAATTGCTCTCAGGGTTTCTTCTTGTCTAGTCCTTGTGCTTTCAACAATGATAGGGTCTGCACTGCTTGTTCTCTTTGCCAGAATAGTTCCTGCTGGGCTGTTTGTGGGATTCACCCTTCTACAGCCTTGCACTTGCACCATTTGCTTAGGTGGGTGCTCATAATTGGATCTTCTGCTTTGGGATTCCTCCTGATTTTGGTTTGTGGCTGTGTTTTCCCTCGCTTCGTGGCGCGGAGGAGGAAGGGGATGGGGAAGGGGAAGACAGAGGAGCATGAGGATGATGGGGATTTGAATGGTGGTGTTGCCATTAACTCAACTCCTTCAATTGCTTCGTGTCCAGGGGTGCCTCAGGTTTTCCGTCTTTCGGAGCTGAAAGATGCTACCAATGGATTCAAAGAGTTCAATGAGCTTGGAAGGGGGAGTTATGGCTTTGTTTACAAGGCTGCTTTGGCAGATGGTAGAGTGGTTGCAGTCAAGAGGGCTAATGCTGCCACAATTATACACACCAACAACCGCGACTTTGAGATGGAGCTTGAAATCTTGTGTAAGATTAGACATTGCAATATTGTTAACCTTGTTGGTTATTGCGCGGAGATGGGGGAAAGGTTGCTTGTTTACGAGTATATGCCTCATGGAACACTTTATGATCACCTCCATGGTGGCCTTTCTCCTCTTAATTGGACCCTTCGATTGAAGATTGCTATGCAGGTTGCAAAGGGCCTTCACTATCTTCACAGGGAGCTTTCACCTCCCATACCCCACAGGGATCTCAAGACCTCCAACATTCTCTTGGATTCAGACTGGGGGGCTCGCATTTCCGATTTCGGACTAATCACTTCCGCTGACAAGGACCTTCCTGGGGACTTGGATACTGATGTTTATAATTTTGGGATCGTGTTGCTTGAGATTCTAAGTGGCAGGAAAGCCTGTGACAGAGATTTCAATCCTCCGGACATAGTGGAGTGGGCAGTGCCTTTGATCAAGCAGGGCAAGGCGGCTGCTATAATCGATCGCTACACGGCTCTGCCCAGAAACGTCGAGCCTTTGCTTAGGCTTGCCGATATAGCTGAGCTTTCTGTCAGAGAGAATCCAGCCGAGCGTCCTCCAGTGCCGGATATAGCATCTTGGTTGGAGCAAATTGTGAAGGATGGATTAATTTTATAG 2289 0.4963 MLQISIFLHLFFVSATAYGTMGPISASFGKRDLFCAIDASGNQNILCFGNNVTSQPPSQSNASSSSLPYFTNLPPMSALSGGQGFFCGILANTSQPCCWPAGKPAADPLLVPPAYRNTAYSRIAAGKSHVCAVRGSYFSDRASGNVDCWEVAQTPNNSFIAKQSLAFYDQSVSNLEFNDVVSGEDFSCGGVRDGGLLCWGPNSKNLQVSNVSDSFSVLASGKNAICGVSNSSGELKCWGDPNSYSDPESAGRVEMVSLSAGSKHFCGIRKDSHVVECWGVSDSSVVPKGYGFMAIASSDYTTCGIREDDLLLDCWVVNASKPDFDPPLQLSSPGLCRNRPCGVGEFAFNVSVLNEPDLTSLCVRQDLKICSPCGSNCSQGFFLSSPCAFNNDRVCTACSLCQNSSCWAVCGIHPSTALHLHHLLRWVLIIGSSALGFLLILVCGCVFPRFVARRRKGMGKGKTEEHEDDGDLNGGVAINSTPSIASCPGVPQVFRLSELKDATNGFKEFNELGRGSYGFVYKAALADGRVVAVKRANAATIIHTNNRDFEMELEILCKIRHCNIVNLVGYCAEMGERLLVYEYMPHGTLYDHLHGGLSPLNWTLRLKIAMQVAKGLHYLHRELSPPIPHRDLKTSNILLDSDWGARISDFGLITSADKDLPGDLDTDVYNFGIVLLEILSGRKACDRDFNPPDIVEWAVPLIKQGKAAAIIDRYTALPRNVEPLLRLADIAELSVRENPAERPPVPDIASWLEQIVKDGLIL 762
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc91397g00003 762 FunFam Serine/threonine-protein kinase-like protein CCR1 661 759 - -
Stsc91397g00003 762 SUPERFAMILY Protein kinase-like (PK-like) 482 753 IPR011009 -
Stsc91397g00003 762 Gene3D - 164 325 IPR009091 -
Stsc91397g00003 762 SMART serkin_6 506 752 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc91397g00003 762 Gene3D - 21 160 IPR009091 -
Stsc91397g00003 762 SUPERFAMILY RCC1/BLIP-II 42 309 IPR009091 -
Stsc91397g00003 762 Pfam Protein kinase domain 506 657 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc91397g00003 762 ProSitePatterns Serine/Threonine protein kinases active-site signature. 627 639 IPR008271 GO:0004672|GO:0006468
Stsc91397g00003 762 ProSiteProfiles Protein kinase domain profile. 506 752 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc91397g00003 762 ProSitePatterns Protein kinases ATP-binding region signature. 512 534 IPR017441 GO:0005524
Stsc91397g00003 762 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN ACR4 4 756 - -
Stsc91397g00003 762 ProSiteProfiles TNFR/NGFR family cysteine-rich region domain profile. 340 395 IPR001368 GO:0005515
Stsc91397g00003 762 FunFam serine/threonine-protein kinase-like protein CCR1 476 583 - -
Stsc91397g00003 762 Gene3D Phosphorylase Kinase; domain 1 479 583 - -
Stsc91397g00003 762 Gene3D Transferase(Phosphotransferase) domain 1 662 759 - -
Stsc91397g00003 762 Gene3D Transferase(Phosphotransferase) domain 1 584 661 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc91397g00003 Stsc-Chr91397 2540 4828 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc91397g00003 1 754 Receptor kinase-like Gene Family AT3G59420 30.760 1.41e-109 353
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Stsc91397g00003 Pkinase 8.6e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc91397g00003 - - aip:107626497 1362.82