Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc91392g00005 ATGGCCTCTTCCGCCGCCGCCACAACCGCAGCAGCGCCACGCCAGCTGTCGCAGAAGGAGCAGGACATCCAGATGATGCTTGCTGCTGAGGTCCATCTTGGAACCAAAAATTGCGACTTCCAGATGGAACGCTACGTCTTCAAAAGGCGCAATGATGGTATTTACATAATTAACCTTGGCAAGACATGGGAGAAGCTCCAACTTGCTGCTAGGATTATTGTCGCCATTGAGAACCCTCAGGATATCATTGTTCAGTCTGCTAGGCCTTATGGTCAGAGGGCAGTCTTGAAATTTGCCCAATACACTGGTGCGAATGCAATAGCTGGAAGGCACACTCCTGGAACATTTACTAATCAGATGCAGACATCATATAACGAACCACGACTCCTCATCCTGACTGATCCAAGGACTGATCATCAGCCCATTAAGGAAGGTGCACTTGGAAATATTCCAACCATTGCCTTCTGTGATACGGACTCTCCAATGCGCTATGTTGATGTTGGCATTCCTGCCAATAACAAGGGAAAGCACAGTATTGGTTGTCTCTTTTGGTTATTAGCAAGGATGGTTCTGCAGATGAGGGGTACTATTCGTCCAGGTCTTAAGTGGGATGTTATGGTGGATTTATTCTTCTATAGAGAACCTGAAGAGGCCAAACAACAAGAGGAGGAAGAATTACCCGCTGCCCCAGAATATGCCATTCAGGACTTCAGTGCCTCTGGCATTGCCAGCTTCCCTGCAGCTGATGGCGAATGGGGGGCTGCTCCAGCTGAACAACCCTGGCCTGAACCAGTTCCCCAACAACCTATCGCAGCTGCTCCTGCTAACTGGGCCCCAGAAGCTGCTGCAACTGCAGGTGATTGGGAGCCAGTTCCAGCTCCACAGGCTGCCGTTCCTGCACCTGGAAGTGTTGCTCCCACTGGCTGGGAATAG 933 0.5048 MASSAAATTAAAPRQLSQKEQDIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQLAARIIVAIENPQDIIVQSARPYGQRAVLKFAQYTGANAIAGRHTPGTFTNQMQTSYNEPRLLILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMRYVDVGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGLKWDVMVDLFFYREPEEAKQQEEEELPAAPEYAIQDFSASGIASFPAADGEWGAAPAEQPWPEPVPQQPIAAAPANWAPEAAATAGDWEPVPAPQAAVPAPGSVAPTGWE 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc91392g00005 310 Gene3D - 22 227 - -
Stsc91392g00005 310 NCBIfam 30S ribosomal protein S2 19 214 IPR005707 GO:0003735|GO:0006412|GO:0015935
Stsc91392g00005 310 MobiDBLite consensus disorder prediction 248 310 - -
Stsc91392g00005 310 CDD RPS2 26 192 IPR001865 GO:0003735|GO:0005840|GO:0006412
Stsc91392g00005 310 Hamap 40S ribosomal protein SA [rps-0]. 10 255 IPR027498 GO:0003735|GO:0006412|GO:0015935
Stsc91392g00005 310 ProSitePatterns Ribosomal protein S2 signature 1. 23 34 IPR018130 GO:0003735|GO:0005840|GO:0006412
Stsc91392g00005 310 PRINTS Ribosomal protein S2 signature 165 179 IPR001865 GO:0003735|GO:0005840|GO:0006412
Stsc91392g00005 310 PRINTS Ribosomal protein S2 signature 23 41 IPR001865 GO:0003735|GO:0005840|GO:0006412
Stsc91392g00005 310 PRINTS Ribosomal protein S2 signature 53 62 IPR001865 GO:0003735|GO:0005840|GO:0006412
Stsc91392g00005 310 PRINTS Ribosomal protein S2 signature 127 144 IPR001865 GO:0003735|GO:0005840|GO:0006412
Stsc91392g00005 310 PRINTS Ribosomal protein S2 signature 102 119 IPR001865 GO:0003735|GO:0005840|GO:0006412
Stsc91392g00005 310 PRINTS Ribosomal protein S2 signature 144 155 IPR001865 GO:0003735|GO:0005840|GO:0006412
Stsc91392g00005 310 PANTHER 40S RIBOSOMAL PROTEIN SA 12 298 IPR005707 GO:0003735|GO:0006412|GO:0015935
Stsc91392g00005 310 ProSitePatterns Ribosomal protein S2 signature 2. 127 151 IPR018130 GO:0003735|GO:0005840|GO:0006412
Stsc91392g00005 310 SUPERFAMILY Ribosomal protein S2 18 208 IPR023591 -
Stsc91392g00005 310 Pfam Ribosomal protein S2 26 121 IPR001865 GO:0003735|GO:0005840|GO:0006412
Stsc91392g00005 310 FunFam 40S ribosomal protein SA 22 228 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc91392g00005 Stsc-Chr91392 19916 22610 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc91392g00005 5 302 Cytoplasmic Ribosomal Protein Gene Family AT3G04770 70.569 1.33e-150 422
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc91392g00005 K02998 - gmx:100786575 454.136