LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc91383g00002	ATGATTGTTCATTTTCTTGTGCGTACAGAATCCATTTCCGTGACTGAGGCAATAAATAGATTTGCTCAGGCTCGTTACCCAGGAATTTACAAGCAGGATTACATCGACGCCCTATATATGTTTTATAATGAAAAGAAGCCTGAAGATTTTGTTTGTCCTCCGACTCCAGAATGGAAAAGAGACTGTGAAACGGATTTTGATGGTGCTGCTGTCCCAGCTGTAAACAGTTATAGAGATATGCCTCCGCAGGTGCATGCGGTAGAAAATTATGGAAATGTTCCTCAGCAGGAGAATACCATGAGGAATGAAGTATTGACAAATGATGATGTTTTGGGAGATTCCATTCCTTCAAGTCAGCTGCATACAATGCAAGAAGTTTGTTATCAACTGCTCAAACTAGGCTCAGGGGGGAGAGGACGTCCGCAGTTTCCTGGATCACACCCCGTTTCTTTGAACAGTGAAAATCTACAACTCTTAAGACAGCGGTATTACTATGCCACTTGGAAAGCTGATGGAACTCGTTACATGATGCTGATTACTTTTGATGGATGTTATCTGATCGACAGAAAGTTTCTCTTCCGAAAGATCAGCATGCGGTTTCCTTGCAGATACTCAAGTGGGGGTACACCTGAGAAGAATCACCACTACACATTACTTGATGGAGAGATGATTATCGACACGGATCCACATACACATAAGCAAGAGAGAAGATACCTCATTTATGATCTGATGGCAATTAATCAAGTCTCAGTAACAGAGCGTCCATTCTACGAACGGTGGAAATTGCTGGAGAAAGAAGTAATTGAGCCTCGTAACATGGAACGAGAGGCTCTTTCCAAGAGTACAAATCCTTATTACAGATATGACTTGGAACCATTTAGTGTGAGGAGGAAAGGGTTTTGGTTACTTTCTACCGTGTCAAAGCTCCTTCATAAATTCATTCCACAACTCTCACATCAATCAGATGGTCTGGTGTTCCAGGGTTGGGATGATCCATACGTCCCTCGCACACATGAAGGCCTTTTGAAGTGGAAATACCCTGAGATGAACTCCGTTGACTTCCTCTGCGAGGTTGGAGCAGGTGGTCGCCCCCTTCTTTATCTGTTTGAACGCGGAAGGAAGAAGTTAATGGAAGGGAATAGAGTTATTTTTAAAGATGCATCAGATATTTATTCCTATTCAGGGAAGATCATTGAGTGCTATTGGGACAATGAAGAGCGTCACTGGGTCTGTATGAGGATCAGATTTGACAAAGCCAATCCAAATGAGATTAACACCTACAGAAAGGTAATGCGAAGCATAAAGGATAACATTACAGAAGAGTTGCTGTTGAATGAGATCAATGGAATCATTAGCCTACCCTTATATGCAGACAGAATACAAAGGGATATCAAGGCTCACCAGAACACCGTCTTGTCGCGGCGCAGATAA	1431	0.4249	MIVHFLVRTESISVTEAINRFAQARYPGIYKQDYIDALYMFYNEKKPEDFVCPPTPEWKRDCETDFDGAAVPAVNSYRDMPPQVHAVENYGNVPQQENTMRNEVLTNDDVLGDSIPSSQLHTMQEVCYQLLKLGSGGRGRPQFPGSHPVSLNSENLQLLRQRYYYATWKADGTRYMMLITFDGCYLIDRKFLFRKISMRFPCRYSSGGTPEKNHHYTLLDGEMIIDTDPHTHKQERRYLIYDLMAINQVSVTERPFYERWKLLEKEVIEPRNMEREALSKSTNPYYRYDLEPFSVRRKGFWLLSTVSKLLHKFIPQLSHQSDGLVFQGWDDPYVPRTHEGLLKWKYPEMNSVDFLCEVGAGGRPLLYLFERGRKKLMEGNRVIFKDASDIYSYSGKIIECYWDNEERHWVCMRIRFDKANPNEINTYRKVMRSIKDNITEELLLNEINGIISLPLYADRIQRDIKAHQNTVLSRRR	476

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc91383g00002	476	Gene3D	DNA ligase/mRNA capping enzyme	106	345	-	-
	Stsc91383g00002	476	FunFam	mRNA capping enzyme family protein	344	453	-	-
	Stsc91383g00002	476	CDD	Adenylation_mRNA_capping	118	346	IPR001339	GO:0004484\|GO:0005524\|GO:0006370
	Stsc91383g00002	476	Gene3D	Protein tyrosine phosphatase superfamily	1	70	IPR029021	-
	Stsc91383g00002	476	PANTHER	MRNA-CAPPING ENZYME	1	447	-	-
	Stsc91383g00002	476	SUPERFAMILY	Nucleic acid-binding proteins	348	460	IPR012340	-
	Stsc91383g00002	476	Pfam	mRNA capping enzyme, catalytic domain	147	345	IPR001339	GO:0004484\|GO:0005524\|GO:0006370
	Stsc91383g00002	476	SUPERFAMILY	DNA ligase/mRNA capping enzyme, catalytic domain	112	346	-	-
	Stsc91383g00002	476	FunFam	mRNA capping enzyme, putative	106	343	-	-
	Stsc91383g00002	476	SUPERFAMILY	(Phosphotyrosine protein) phosphatases II	1	60	IPR029021	-
	Stsc91383g00002	476	PIRSF	mRNA_capping_HCE	1	476	IPR017074	GO:0004484\|GO:0006370\|GO:0140818
	Stsc91383g00002	476	Gene3D	-	384	452	IPR012340	-
	Stsc91383g00002	476	Pfam	mRNA capping enzyme, C-terminal domain	383	443	IPR013846	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc91383g00002	Stsc-Chr91383	1783	5840	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc91383g00002	1	466	Protein tyrosine phosphatase (PTP) family	AT3G09100	63.734	0.0	609

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc91383g00002	K13917		-	vra:106758011	815.068