Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc91378g00002 ATGGAATGGGATAGGTGGGTGAAACAACGTGATCAGAGGCGTTGGACAAAGGAGAGATTCATAGAGTTGGAAGCGGTTTCTTTCTCTATGTTTGTGGATAATTTACCGAAGTATGTATCTAAGAAGGAACTGTTCTACTTGTTTAGTTGGTCAGGTATGATTAATGACATTTACCTATCTAGAAAGATGAAAGGAGGAAAGCTACATTTGTTTGCGTTCATAAGATATACAACAAAGAGTAGTGCTTTGAAAGCTATAGCAGAGATGAATCATATGAGTCTTACTGGGAGAAGATTATTCGTAGGTAAGGCTTGGAATAGAAGAGACAACAAAACCCTTGAGGATTATGCGAGTCCAAGAAATGTAGCAGAGAAAGATATAGTGATAGTGAATAGAAGGGAGATTGATTCGGCAGCAGAATTAGTGTTTTTGGAGTGCGATGTTGGTGTTGAGTTAGAGTGTGCTATGGAGTTGAGTGGCTCTTTGGCGACAAACGAATCTGTGTGCTCTTCTGAAGTAGGAATGGGTGAGGTTGTGAAAGAAGGGTCTCATTATAAGCAGCTTCGCTCGCAAAGGAAGGAGAAAGAAGCAAACCCGATGGAGAGGGGTCCTAAGTTAGATAAGGGAGAGCGACGATTAGGTCGGGCAACCGAGAATGGCCCAGGGGCTTCCAATGATGAAGAAGATTTTATGTCCAGTTTAAAGGAGCTTCATGAGGCTCGAGAGTTGGAAAGAAGAGAAGCAAAGAAGAAGGAGAAGGCGCATAAGAGTAGGCCGAAGAAATTAAAGCTATGA 795 0.4214 MEWDRWVKQRDQRRWTKERFIELEAVSFSMFVDNLPKYVSKKELFYLFSWSGMINDIYLSRKMKGGKLHLFAFIRYTTKSSALKAIAEMNHMSLTGRRLFVGKAWNRRDNKTLEDYASPRNVAEKDIVIVNRREIDSAAELVFLECDVGVELECAMELSGSLATNESVCSSEVGMGEVVKEGSHYKQLRSQRKEKEANPMERGPKLDKGERRLGRATENGPGASNDEEDFMSSLKELHEARELERREAKKKEKAHKSRPKKLKL 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc91378g00002 264 SUPERFAMILY RNA-binding domain, RBD 28 110 IPR035979 GO:0003676
Stsc91378g00002 264 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 28 106 IPR000504 GO:0003723
Stsc91378g00002 264 CDD RRM_SF 31 101 - -
Stsc91378g00002 264 Coils Coil 231 254 - -
Stsc91378g00002 264 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 29 251 - -
Stsc91378g00002 264 Gene3D - 7 118 IPR012677 -
Stsc91378g00002 264 MobiDBLite consensus disorder prediction 182 215 - -
Stsc91378g00002 264 SMART rrm1_1 29 102 IPR000504 GO:0003723
Stsc91378g00002 264 MobiDBLite consensus disorder prediction 229 250 - -
Stsc91378g00002 264 MobiDBLite consensus disorder prediction 182 264 - -
Stsc91378g00002 264 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 31 99 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc91378g00002 Stsc-Chr91378 15523 16634 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc91378g00002 29 101 Eukaryotic Initiation Factors Gene Family AT1G49760 28.767 5.12e-06 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc91378g00002 - K12891 aip:107648691 123.25