Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc91364g00001 ATGAAGCTTTCAACATCAGGGTTGCCTCAGCAGGGACAACATGAAGGAGGGGAGAAGAAGTGCTTGAATTCTGAGCTATGGCATGCATGTGCGGGTCCTTTGGTGTCCCTACCAACTGCAGGGACCCGTGTGGTTTACTTCCCTCAGGGTCATAGTGAGCAGGTTGCTGCCACAACTAACAGAGAAGTTGATGGCCACATACCGAATTACCCGAGTTTGCCGCCCCAGTTGATTTGCCAACTTCACAATGTTACGATGCATGCAGATGTTGAAACGGATGAAGTTTATGCCCAAATGACACTGCAGCCGTTAACTCCGCAAGAGCAGAAGGATACGTTTCTTCCCATGGAATTGGGAGTTCCAAGTAAGCAGCCCTCGAATTATTTTTGCAAGACCTTAACGGATTTCTCACAGCAACCTCCTGCGCAAGAACTAATCGCTAGGGATCTCCATGACGTTGAGTGGAAATTTCGTCATATTTTTAGGGGACAGCCAAAGAGGCACCTTCTTACTACCGGCTGGAGTGTATTTGTTAGTGCCAAAAGACTTGTGGCAGGAGATTCAGTGCTTTTCATATGGAATGAAAAGAATCAGCTTCTTTTGGGAATACGTCGTGCTAATAGACCACAGACTGTAATGCCTTCGTCAGTTCTATCCAGTGACAGTATGCATATTGGGCTTCTCGCAGCTGCCGCCCATGCTGCAGCAACTAATAGTTGTTTCACAGTGTTCTATAATCCAAGGGCTAGTCCATCGGAGTTTGTCATACCACTTTCAAAGTATATCAAAGCTGTATACCATACACGTGTTTCTGTCGGTATGCGTTTCAGGATGCTTTTCGAGACTGAAGAATCAAGTGTCCGGAGGTACATGGGTACAATAACTGGAATAAGTGACCTGGATCCAGTTCGTTGGCCAAATTCTCATTGGCGATCCGTAAAGGTTGGTTGGGATGAATCCACAGCAGGAGATAGGCAGCCACGAGTATCGTTATGGGAAATTGAACCTTTAACAACATTCCCAATGTATCCATCACTATTCCCGCTCAGATTGAAACGTCCATGGCATCCTGGCACCTCATCTTTTCTTGATGGAAGAGATGATGCAACTAATGGGCTAATGTGGCTGAGAGGTGGAGCAGGCGACCAAGGTCTTAATTCTCTCAATTTTCAAAGTGTGGGTATGCTGCCATGGATGCAGCAAAGACTGGATCCGGCTTTGCTTGGAAATGATCATAATCAGCAGTACCAAGCCATGTTAGCAGCTGGTTTGCAGAACATAGGAAGTGGAGAACTCTTGAGGCAACAAATGATGAATTTCCAACAGCCTTTTAATTATCTCCAACAATCAGGAAATGTCAACACTCCTATCCAGCTTCAGCAGCAGCAAACGATTCAGCAAGCAGTGACTTCCAATATCTTGCAGCCACAAGCCCCAGTATTGACAGAGAACATGTCTCAGCAGCTCTTTCAGAAGCCGCATAACAACCGAGAAGACCATGCGCAGCAGCAGCACACTTATCAGGATTCACTTTTAGTTCAGAGTGACCAGCTCCACCAAAGGCAACACTCAAGTTTGCCTTCACCATCGTACTCGAAACCAGAGTTTGCAGATTCAAGCATTAAGTTTGAAGGATCAGGTTCACCAGGACAGAACATGCTTGGTTCACTTTGTCCTGAAGGGAGCAGCAATCTCTTGAACTTATCTAGAGGTGGTCAGTCGATACCAACAGAACAGTTATCCCAACAATCATGGCCCCCGAAGTATACACCTCTGCAGGTCAATGCTTTTGCCAACTCAATGTCACATGTGCAATATTCTGGAAAAGATATTGCAGTGGCATCACCACATCGTAATTCAGATGCTCAGAATCCAACTCTCTTTGGAGTCAATATCGATTCGTCTGGTCTTCTACTCCCCACCACTGTCCCCCATTACACCACTTCGTCTGCTGATACCGATTCTTCAACAATGCCATTAGGGGATTCTGGATTCCAGGGCCCACTGTATGCTTGCATGCAAGAGTCATCGGAGTTAATGCAAAGTGCAGGACAAGTTGACCCTCAAAACCAGACACCGACGTTTGTCAAGGTTTATAAATCAGGGTCAGTTGGGCGGTCACTTGACATCTCCCGGTTCAGCAGCTATCATGAACTGCGAGAAGAGTTGGCTCAGATGTTTGGAATTGAGGGGAAATCATTTGTCAACAATGTTTGGTATATCAAAATACTTTCACCTGAAGATATTCAGAAGATGGGAGAAGCCGTAGAATCTCGTGACGGTGTTCCTAGCCTACCATCAATAGGCGAATACTGA 2316 0.4594 MKLSTSGLPQQGQHEGGEKKCLNSELWHACAGPLVSLPTAGTRVVYFPQGHSEQVAATTNREVDGHIPNYPSLPPQLICQLHNVTMHADVETDEVYAQMTLQPLTPQEQKDTFLPMELGVPSKQPSNYFCKTLTDFSQQPPAQELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRANRPQTVMPSSVLSSDSMHIGLLAAAAHAAATNSCFTVFYNPRASPSEFVIPLSKYIKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVKVGWDESTAGDRQPRVSLWEIEPLTTFPMYPSLFPLRLKRPWHPGTSSFLDGRDDATNGLMWLRGGAGDQGLNSLNFQSVGMLPWMQQRLDPALLGNDHNQQYQAMLAAGLQNIGSGELLRQQMMNFQQPFNYLQQSGNVNTPIQLQQQQTIQQAVTSNILQPQAPVLTENMSQQLFQKPHNNREDHAQQQHTYQDSLLVQSDQLHQRQHSSLPSPSYSKPEFADSSIKFEGSGSPGQNMLGSLCPEGSSNLLNLSRGGQSIPTEQLSQQSWPPKYTPLQVNAFANSMSHVQYSGKDIAVASPHRNSDAQNPTLFGVNIDSSGLLLPTTVPHYTTSSADTDSSTMPLGDSGFQGPLYACMQESSELMQSAGQVDPQNQTPTFVKVYKSGSVGRSLDISRFSSYHELREELAQMFGIEGKSFVNNVWYIKILSPEDIQKMGEAVESRDGVPSLPSIGEY 771
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc91364g00001 771 Gene3D - 269 341 - -
Stsc91364g00001 771 Pfam Auxin response factor 231 314 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Stsc91364g00001 771 CDD B3_DNA 118 205 IPR003340 GO:0003677
Stsc91364g00001 771 ProSiteProfiles PB1 domain profile. 693 771 IPR000270 GO:0005515
Stsc91364g00001 771 SMART B3_2 129 207 IPR003340 GO:0003677
Stsc91364g00001 771 FunFam Auxin response factor 269 341 - -
Stsc91364g00001 771 Pfam B3 DNA binding domain 130 206 IPR003340 GO:0003677
Stsc91364g00001 771 MobiDBLite consensus disorder prediction 517 586 - -
Stsc91364g00001 771 Gene3D - 104 206 IPR015300 -
Stsc91364g00001 771 MobiDBLite consensus disorder prediction 517 535 - -
Stsc91364g00001 771 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 135 753 IPR044835 GO:0003677|GO:0006355|GO:0009725
Stsc91364g00001 771 SUPERFAMILY DNA-binding pseudobarrel domain 113 234 IPR015300 -
Stsc91364g00001 771 MobiDBLite consensus disorder prediction 544 586 - -
Stsc91364g00001 771 Gene3D - 689 738 - -
Stsc91364g00001 771 ProSiteProfiles B3 DNA-binding domain profile. 144 207 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc91364g00001 Stsc-Chr91364 9579 16463 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc91364g00001 99 762 B3 DNA Binding Superfamily AT5G37020 60.989 0.0 798
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Stsc91364g00001 Auxin_resp 5.7e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc91364g00001 - - gmx:100780393 1332.78