Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc91353g00001 ATGAACATTACGATCGATTCCGCGCTCCTCCATTTCCTTGTTCCCTCTCTCTGGGAGATCAAAGTCTCCGTCGTCGCTTCATTCGTCGTCATACTCGCCTACTCCTTCTTCACTTTCCGTACCGGCGACTCCGACGACCTCGCCGACCGATCACTCTCTGACAATCCCGTAATCGACGCTTCCGACGACAAAGACAAGATCATATTGAAAGGAGATTCTCAAGGTGGTTCGGCCTACCTCATCAAGTTAGAACTATTGGCTGCTAAGAATCTAGTTGGAGCAAACTTAAATGGAACATCGGATCCTTATGTTATCATCACCTGCGGGAATGAAAAGCGATTCAGTTCCATGGTCCCTGGGTCAAGAAACCCTATGTGGGGTGAGGAATTCAATTTTTCTGTTGATGAACTTCCTGTTCAGATCAATGTCACAATATATGATTGGGATATAATTTGGAAAAGTGCTGTTCTTGGTTCAGTGACTGTTCCAGTTGAAAGAGAAGGTCAAACGGGTGCCGTATGGTACTCTTTGGATAGCACATCAGGGCAGGTTTGTCTTCATATAAAAACAATAAAACAATCTGCAAACTCTACCAGGATAAATGGTTTTGGTGGACCCAGCACTCGAAGAAGGATGCCTGTGGAAAAAGTGGGCCCCACTGTTGTTCATCAAAAGCCAGGGCCTCTTCAAACAATATTCGATCTTCTTCCAGATGAGGTTCTTGATCATAGTTATTCTTGTGCACTTGAGAGATCATTCTTGTATCATGGTCGCATGTATGTTTCTGCGTGGCACATTTGTTTCCATTCCAATGTGTTCTCAAAGCAAATAAAGGTGGTTATTCCATTTGAGGACATCGATGAGATTCGAAGAAGTCAACATGCATTTATAAATCCTGCTATAACAATTATTCTCCGCATGGGTGCTGGTGGACATGGTGTTCCTCCTTTGGGAAGTCCTGATGGTAGAGTCAGGTATAAGTTTGCCTCATTTTGGAATAGGAATCATGCATTTAGGAATCTGCAACGTGCAGCAAATAATTTCCATGAAATGTTGGAAGCCGAGAAGAAGGAAAATGCAGAGTCTGAGCTGCGAGCACATAGCAGTTCTGTCAGAGGAACTAAGATACTTGATAATGTTCCTGAAGAAAGCACGCCAAAAACTGGAAAACTTCAACCTTTTACCAAAGAAGAAGCTTTAGTTGGTATATATAATGGTGTTTTTCCTTGCACAGCTGAGCAGTTTTTTAACTTACTATTAAATGATGGATCACAATTTATTAGCAAGTATCGTGCAGTAAGAAAGGATACTAATCTTGTGATGGGACAGTGGCATACAGCAGAAGAATATGATGGTCAAGTTCGAGAAATAACCTTCAGATCCCTCTGTAACAGCCCTATGTGCCCTCCGGACACCGCAATGACAGAATGGCAACATCATGTTTTATCACCAGACAAGAAAAAACTGGTGTTTGAGACTGTACAGCAGGCTCATGATGTTCCATTTGGGTCGTATTTTGAGGTACACTGTAAATGGGTTCTCGAGACAACAAATGAAAGCTCATGTACTTTGGACATAAGAGTGGGTGCGCATTTTAAGAAATGGTGTGTGATGCAATCGAAGATAAAGTCAGGGGCAGTCAACGAGTACAAGAAAGAAGTTGAGGTGATGTTGGAGGTTGCTCGTTCGTACATAAAGTCGCATACTACTGATGATGAGACTGATATGGCATCTTCGCCTCCTGTGGTGGTGATGCTGGAAAACTAA 1767 0.4273 MNITIDSALLHFLVPSLWEIKVSVVASFVVILAYSFFTFRTGDSDDLADRSLSDNPVIDASDDKDKIILKGDSQGGSAYLIKLELLAAKNLVGANLNGTSDPYVIITCGNEKRFSSMVPGSRNPMWGEEFNFSVDELPVQINVTIYDWDIIWKSAVLGSVTVPVEREGQTGAVWYSLDSTSGQVCLHIKTIKQSANSTRINGFGGPSTRRRMPVEKVGPTVVHQKPGPLQTIFDLLPDEVLDHSYSCALERSFLYHGRMYVSAWHICFHSNVFSKQIKVVIPFEDIDEIRRSQHAFINPAITIILRMGAGGHGVPPLGSPDGRVRYKFASFWNRNHAFRNLQRAANNFHEMLEAEKKENAESELRAHSSSVRGTKILDNVPEESTPKTGKLQPFTKEEALVGIYNGVFPCTAEQFFNLLLNDGSQFISKYRAVRKDTNLVMGQWHTAEEYDGQVREITFRSLCNSPMCPPDTAMTEWQHHVLSPDKKKLVFETVQQAHDVPFGSYFEVHCKWVLETTNESSCTLDIRVGAHFKKWCVMQSKIKSGAVNEYKKEVEVMLEVARSYIKSHTTDDETDMASSPPVVVMLEN 588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc91353g00001 588 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 79 190 IPR035892 -
Stsc91353g00001 588 Gene3D - 228 347 IPR011993 -
Stsc91353g00001 588 FunFam BAG-associated GRAM protein 1 isoform X2 228 347 - -
Stsc91353g00001 588 Coils Coil 338 358 - -
Stsc91353g00001 588 Pfam VAD1 Analog of StAR-related lipid transfer domain 403 548 IPR031968 -
Stsc91353g00001 588 CDD C2 81 177 - -
Stsc91353g00001 588 ProSiteProfiles VASt domain profile. 399 569 IPR031968 -
Stsc91353g00001 588 Pfam GRAM domain 230 298 IPR004182 -
Stsc91353g00001 588 SMART C2_3c 80 176 IPR000008 -
Stsc91353g00001 588 SMART gram2001c 227 293 IPR004182 -
Stsc91353g00001 588 PRINTS C2 domain signature 96 108 IPR000008 -
Stsc91353g00001 588 PRINTS C2 domain signature 141 149 IPR000008 -
Stsc91353g00001 588 PRINTS C2 domain signature 120 133 IPR000008 -
Stsc91353g00001 588 Gene3D C2 domain 70 193 IPR035892 -
Stsc91353g00001 588 ProSiteProfiles C2 domain profile. 61 177 IPR000008 -
Stsc91353g00001 588 PANTHER BAG-ASSOCIATED GRAM PROTEIN 1 5 579 IPR044655 -
Stsc91353g00001 588 Pfam C2 domain 82 177 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc91353g00001 Stsc-Chr91353 2220 9828 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc91353g00001 80 165 C2H2 Transcription Factor Family AT4G21160 26.744 8.39e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc91353g00001 - - gmx:100789923 1010.75