Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc91346g00003 ATGGCTTTCTTTCCAGCAAATTTCATGTTACAAACCTCACATCATCATCACCAAGATGAACATCAACCTCCACCTTCACTCAACTCAATCCTAACTTCATGTGCACCTCAAGAATACCATGGAGGAGGATCGTTTTTAGGAAAGAGATCGATGTCGTTCTCGGGAATTGAGCTCGGAGAAGTAGAAGCAAATGGTGGAGAAGAAGAGCTTTCAGACGATGGATCACAAGCAGGGGAGAAGAAGAGGAGGCTAAACATGGAGCAAGTGAAGACTCTTGAGAAAAGCTTTGAGTTGGGGAACAAGCTCGAACCCGAGAGAAAAATGCAGCTTGCGAGAGCTCTTGGGCTTCAACCCAGACAGATTGCAATTTGGTTCCAAAACAGAAGAGCTAGATGGAAGACTAAGCAATTAGAGAAAGATTATGATCTTCTTAAGCGACAATTTGAAGCTCTTAAGGCTGATAATGATGCTCTTCAAGCTCAGAATCACAAACTTCATACTCAGATAAAGGCACTGAAAAATAGAGAGCCAACAGAATCAATAAACCTAAACAAAGAGACAGAGGGATCAAGCAGCAATAGGAGTGAAAACAGCTCAGAAATCAAGTTGGATATATCAACAAGGACACCAAATTCAGCCATTGACAGTCCTCTATCCACTCATCATCATCATAATCACAACACAAACAACAATAACAGCAGAACACTGTTTCCATCACCATCAAATGCTGCTGCTGCTGCTGCCAGGCCAACAGAAGTTGCACAGCTTTTTCAAACCACTCCACATCATCATCATCATCATCACATGGTCAAAGAAGAGAGCTTGAGCAACATGTTCTGTGCCATTGATGACCAATCTGGCCTCTGGCCATGGTTAGAGCATCAAAATTTCAATTGA 897 0.4236 MAFFPANFMLQTSHHHHQDEHQPPPSLNSILTSCAPQEYHGGGSFLGKRSMSFSGIELGEVEANGGEEELSDDGSQAGEKKRRLNMEQVKTLEKSFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDLLKRQFEALKADNDALQAQNHKLHTQIKALKNREPTESINLNKETEGSSSNRSENSSEIKLDISTRTPNSAIDSPLSTHHHHNHNTNNNNSRTLFPSPSNAAAAAARPTEVAQLFQTTPHHHHHHHMVKEESLSNMFCAIDDQSGLWPWLEHQNFN 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc91346g00003 298 CDD homeodomain 80 136 IPR001356 GO:0003677
Stsc91346g00003 298 Pfam Homeobox associated leucine zipper 135 175 IPR003106 GO:0006355|GO:0043565
Stsc91346g00003 298 FunFam Homeobox-leucine zipper protein ATHB-13 72 139 - -
Stsc91346g00003 298 SMART HOX_1 78 139 IPR001356 GO:0003677
Stsc91346g00003 298 Gene3D - 72 141 - -
Stsc91346g00003 298 MobiDBLite consensus disorder prediction 174 240 - -
Stsc91346g00003 298 MobiDBLite consensus disorder prediction 171 245 - -
Stsc91346g00003 298 Pfam Homeodomain 80 133 IPR001356 GO:0003677
Stsc91346g00003 298 PRINTS Lambda-repressor HTH signature 106 115 IPR000047 GO:0003677
Stsc91346g00003 298 PRINTS Lambda-repressor HTH signature 115 131 IPR000047 GO:0003677
Stsc91346g00003 298 ProSiteProfiles 'Homeobox' domain profile. 75 135 IPR001356 GO:0003677
Stsc91346g00003 298 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 57 266 IPR045224 GO:0003700
Stsc91346g00003 298 ProSitePatterns 'Homeobox' domain signature. 110 133 IPR017970 GO:0000981|GO:0006355
Stsc91346g00003 298 SUPERFAMILY Homeodomain-like 72 137 IPR009057 -
Stsc91346g00003 298 Coils Coil 127 175 - -
Stsc91346g00003 298 MobiDBLite consensus disorder prediction 62 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc91346g00003 Stsc-Chr91346 16840 18707 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc91346g00003 1 298 Homeobox Transcription Factor Family AT1G69780 61.311 5.09e-113 327
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Stsc91346g00003 Homeodomain 1.5e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc91346g00003 K09338 - gmx:100801479 446.432