Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc91342g00005 ATGCTCTTCTCTGATAAAGGTCCTGGTTCACAATTTATAGCTATAAATTGGCAGTCCCGAAGAGCTCGCTCCAAAAGGTTACATCATCTAGCTCAGATGAAACGTAAACCCAGTATTGCCATTCAGAAAAGGAAAGATGATGAGTTGGAGGGAAGAGTAGATGATTATATTCCCAAAAAGAAGTTAATTCAATATTCAAGAAGGAAGTTCAAGTCTAAGCAAAATTCTTATTCTGGAGCAAGCATTGTCCATGAATTGCAAGGTAAGTCCAAAATTTTGTCAGCTGGTCCGAGTGGGGATCATTATAATTGTGGCTCTAAAAGGAAGCTTGATGCTGATAATTTCAGAAGCGATTGTGCTTTGTCAAATGTATCTGCTTCCATTGCAGTGTCTCCAGTGGTTCATGAAATTCAGGGTACTGAATTGCCCAATAGCATGAGCTTGAACACTGATACCTCACAAATCTCAAATTCCTCTCCAGGTCATTGTTTAGTGAATGAAAATGTTGAAGCTGAGATTGAGAATCACACTATGCAGGAGTTAGCAATAGATGGAGAAAATGATGCATCACTCAATCAGTCTAAGATTCATCGTGGTACTAGTAATTTGGACATGAGTGGCAAGGAGGAGCTTGAGTGCCAGGACAAGAAATATTCTAGCTCACTTGTGACTTTGACGGACAGAAATGTTGACGTTGATCGTAAATGTGATAGCTTGGCTTTGGATGAAGAATTGCATCGAGAAAATCTGTCTGCCTGCAAAAGCAACAATGGAGAAGCTACTTCATCTAGTGTCTCATTGGCAACTCAACCTACACTTGCCTCTAAGGATGACGCGTTAAATGAATCGGTTTCGGAGTCTGCAAAGCAGGGCAAGGTCCAAGATAAGAATACAATTCATGAGGAACCTGTTTCTGGTAATGTTGCAAGAGGCAAAATTAGAAGTGAAGCCATCTCAGAGTTACGGTGTTCTGTAGTTGCAGTAGAAACTTGTCCTAAAGAAGATGCATCTATTCAATCCGTTTCAGAAGAAGAAAATGAATTGAAAATCCAGTCAAACAATGGAATTGAAGAGGAACATAACTCTTATCCCAAGATATCATTAAAGGACTGTGCTATATCAATTCAGAAATGTTCTAAAGTTGATAAAGATACTTGTATTGGAGATATTAATGGAAGTGAAGATAAATTGTCACAAGATATAATGAAGGAGCAGGAAAGCCGTGAATTGAGTAATCCAGTTCCCAGATCAAATGCTCGGAAGAAAAGAAAGACGGAACTGGACCATATAACAGAGAATCAATTCAACTGCAACAACTATATTCGAAGTCCGTGTGAAGGTCTGAGGCCAAGAGCTACAAAGATAGCCCCCGATAAAATTGTAGGAGAAGCCGGCCAAGATGACAAGGAGAATCCGAAGGCTAGAAGGGATCAGAAACCTTTTGAAGTTCCCGCTGCACACAAGAAGAAAAAAGATGATGTTGAAAAGCCCCACAGGTGTGACCTCGATGGCTGCAGTATGAGTTTCATGACGAAGGGTGAATTACAATTGCACAAGCGTAACCTTTGCCCTCACAAGGGGTGTGGCAAGAAGTTCAGCTCACACAAATACGCTCTCCTTCACCAGCGTGTTCATGAAGACAAGAGGCCCCTCAAATGCCCATGGAAAGGTTGTACCATGTCATTCAAGTGGGCGTGGGCAAGGACGGAGCACATACGGGTGCACACTGGGGAGAAGCCTTATAAATGCAAGGTCGAGGGTTGCGGCCTTTCTTTCAGGTTTGTATCGGATTTTAGCCGTCACAGGAGGAAAACAGGACACTACGTGAAATCTGATTGA 1839 0.4176 MLFSDKGPGSQFIAINWQSRRARSKRLHHLAQMKRKPSIAIQKRKDDELEGRVDDYIPKKKLIQYSRRKFKSKQNSYSGASIVHELQGKSKILSAGPSGDHYNCGSKRKLDADNFRSDCALSNVSASIAVSPVVHEIQGTELPNSMSLNTDTSQISNSSPGHCLVNENVEAEIENHTMQELAIDGENDASLNQSKIHRGTSNLDMSGKEELECQDKKYSSSLVTLTDRNVDVDRKCDSLALDEELHRENLSACKSNNGEATSSSVSLATQPTLASKDDALNESVSESAKQGKVQDKNTIHEEPVSGNVARGKIRSEAISELRCSVVAVETCPKEDASIQSVSEEENELKIQSNNGIEEEHNSYPKISLKDCAISIQKCSKVDKDTCIGDINGSEDKLSQDIMKEQESRELSNPVPRSNARKKRKTELDHITENQFNCNNYIRSPCEGLRPRATKIAPDKIVGEAGQDDKENPKARRDQKPFEVPAAHKKKKDDVEKPHRCDLDGCSMSFMTKGELQLHKRNLCPHKGCGKKFSSHKYALLHQRVHEDKRPLKCPWKGCTMSFKWAWARTEHIRVHTGEKPYKCKVEGCGLSFRFVSDFSRHRRKTGHYVKSD 612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc91342g00005 612 SMART c2h2final6 521 545 IPR013087 -
Stsc91342g00005 612 SMART c2h2final6 498 520 IPR013087 -
Stsc91342g00005 612 SMART c2h2final6 581 607 IPR013087 -
Stsc91342g00005 612 SMART c2h2final6 551 575 IPR013087 -
Stsc91342g00005 612 ProSitePatterns Zinc finger C2H2 type domain signature. 553 575 IPR013087 -
Stsc91342g00005 612 ProSitePatterns Zinc finger C2H2 type domain signature. 583 607 IPR013087 -
Stsc91342g00005 612 SUPERFAMILY beta-beta-alpha zinc fingers 522 558 IPR036236 -
Stsc91342g00005 612 MobiDBLite consensus disorder prediction 454 497 - -
Stsc91342g00005 612 PANTHER ZINC FINGER PROTEIN ZIC AND GLI 248 604 - -
Stsc91342g00005 612 ProSiteProfiles Zinc finger C2H2 type domain profile. 521 550 IPR013087 -
Stsc91342g00005 612 SUPERFAMILY beta-beta-alpha zinc fingers 561 604 IPR036236 -
Stsc91342g00005 612 ProSiteProfiles Zinc finger C2H2 type domain profile. 581 612 IPR013087 -
Stsc91342g00005 612 MobiDBLite consensus disorder prediction 461 497 - -
Stsc91342g00005 612 Gene3D Classic Zinc Finger 470 520 - -
Stsc91342g00005 612 ProSiteProfiles Zinc finger C2H2 type domain profile. 551 580 IPR013087 -
Stsc91342g00005 612 ProSitePatterns Zinc finger C2H2 type domain signature. 523 545 IPR013087 -
Stsc91342g00005 612 Gene3D Classic Zinc Finger 521 576 - -
Stsc91342g00005 612 FunFam Probable lysine-specific demethylase ELF6 548 577 - -
Stsc91342g00005 612 MobiDBLite consensus disorder prediction 391 425 - -
Stsc91342g00005 612 Gene3D Classic Zinc Finger 577 607 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc91342g00005 Stsc-Chr91342 24994 27667 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc91342g00005 413 609 C2H2 Transcription Factor Family AT5G04240 53.234 9.60e-64 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Stsc91342g00005 None None None