Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Stsc91342g00004 | ATGTTGCAGTGCAAAGGCGGAGCCAATGTGCTCATAATATGCCATTCAGACTATGAGAAGATAAAGGCACATGCGAGGGCAGTTGCAGAAGAGACACACATTGCTTTTGATTATGACGAGGTTCCATTAGAAACTGCATCCCCTGAAAATTTGGCTCTCATTGATCTAGCAATTGATGGTGAGGAATATGATGAATGCGAAGATTGGACATCTAACTTGGGCATCAATCTGCGCCATTGTGTTAAGGCAAGAAATAAGTCTCCATCTAAACAAGCTATTTGGACCCTGGCATTAGGGATGCTCTTCTCTGATAAAGGTCCTGGTTCACAATTTATAGCTATAAATTGGCAGTCCCGAAGAGCTCGCTCCAAAAGGTTACATCATCTAGCTCAGATGAAACGTAAACCCAGTATTGCCATTCAGAAAAGGAAAGATGATGAGTTGGAGGGAAGAGTAGATGATTATATTCCCAAAAAGAAGTTAATTCAATATTCAAGAAGGAAGTTCAAGTCTAAGCAAAATTCTTATTCTGGAGCAAGCATTGTCCATGAATTGCAAGGTAAGTCCAAAATTTTGTCAGCTGGTCCGAGTGGGGATCATTATAATTGTGGCTCTAAAAGGAAGCTTGATGCTGATAATTTCAGAAGCGATTGTGCTTTGTCAAATGTATCTGCTTCCATTGCAGTGTCTCCAGTGGTTCATGAAATTCAGGGTACTGAATTGCCCAATAGCATGAGCTTGAACACTGATACCTCACAAATCTCAAATTCCTCTCCAGGTCATTGTTTAGTGAATGAAAATGTTGAAGCTGAGATTGAGAATCACACTATGCAGGAGTTAGCAATAGATGGAGAAAATGATGCATCACTCAATCAGTCTAAGATTCATCGTGGTACTAGTAATTTGGACATGAGTGGCAAGGAGGAGCTTGAGTGCCAGGACAAGAAATATTCTAGCTCACTTGTGACTTTGACGGACAGAAATGTTGACGTTGATCGTAAATGTGATAGCTTGGCTTTGGATGAAGAATTGCATCGAGAAAATCTGTCTGCCTGCAAAAGCAACAATGGAGAAGCTACTTCATCTAGTGTCTCATTGGCAACTCAACCTACACTTGCCTCTAAGGATGACGCGTTAAATGAATCGGTTTCGGAGTCTGCAAAGCAGGGCAAGGTCCAAGATAAGAATACAATTCATGAGGAACCTGTTTCTGGTAATGTTGCAAGAGGCAAAATTAGAAGTGAAGCCATCTCAGAGTTACGGTGTTCTGTAGTTGCAGTAGAAACTTGTCCTAAAGAAGATGCATCTATTCAATCCGTTTCAGAAGAAGAAAATGAATTGAAAATCCAGTCAAACAATGGAATTGAAGAGGAACATAACTCTTATCCCAAGATATCATTAAAGGACTGTGCTATATCAATTCAGAAATGTTCTAAAGTTGATAAAGATACTTGTATTGGAGATATTAATGGAAGTGAAGATAAATTGTCACAAGATATAATGAAGGAGCAGGAAAGCCGTGAATTGAGTAATCCAGTTCCCAGATCAAATGCTCGGAAGAAAAGAAAGACGGAACTGGACCATATAACAGAGAATCAATTCAACTGCAACAACTATATTCGAAGTCCGTGTGAAGGTCTGAGGCCAAGAGCTACAAAGATAGCCCCCGATAAAATTGTAGGAGAAGCCGGCCAAGATGACAAGGAGAATCCGAAGGCTAGAAGGGATCAGAAACCTTTTGAAGTTCCCGCTGCACACAAGAAGAAAAAAGATGATGTTGAAAAGCCCCACAGGTGTGACCTCGATGGCTGCAGTATGAGTTTCATGACGAAGGGTGAATTACAATTGCACAAGCGTAACCTTTGCCCTCACAAGGGGTGTGGCAAGAAGTTCAGCTCACACAAATACGCTCTCCTTCACCAGCGTGTTCATGAAGACAAGAGGCCCCTCAAATGCCCATGGAAAGGTTGTACCATGTCATTCAAGTGGGCGTGGGCAAGGACGGAGCACATACGGGTGCACACTGGGGAGAAGCCTTATAAATGCAAGGTCGAGGGTTGCGGCCTTTCTTTCAGGTTTGTATCGGATTTTAGCCGTCACAGGAGGAAAACAGGACACTACGTGAAATCTGATTGA | 2136 | 0.4195 | MLQCKGGANVLIICHSDYEKIKAHARAVAEETHIAFDYDEVPLETASPENLALIDLAIDGEEYDECEDWTSNLGINLRHCVKARNKSPSKQAIWTLALGMLFSDKGPGSQFIAINWQSRRARSKRLHHLAQMKRKPSIAIQKRKDDELEGRVDDYIPKKKLIQYSRRKFKSKQNSYSGASIVHELQGKSKILSAGPSGDHYNCGSKRKLDADNFRSDCALSNVSASIAVSPVVHEIQGTELPNSMSLNTDTSQISNSSPGHCLVNENVEAEIENHTMQELAIDGENDASLNQSKIHRGTSNLDMSGKEELECQDKKYSSSLVTLTDRNVDVDRKCDSLALDEELHRENLSACKSNNGEATSSSVSLATQPTLASKDDALNESVSESAKQGKVQDKNTIHEEPVSGNVARGKIRSEAISELRCSVVAVETCPKEDASIQSVSEEENELKIQSNNGIEEEHNSYPKISLKDCAISIQKCSKVDKDTCIGDINGSEDKLSQDIMKEQESRELSNPVPRSNARKKRKTELDHITENQFNCNNYIRSPCEGLRPRATKIAPDKIVGEAGQDDKENPKARRDQKPFEVPAAHKKKKDDVEKPHRCDLDGCSMSFMTKGELQLHKRNLCPHKGCGKKFSSHKYALLHQRVHEDKRPLKCPWKGCTMSFKWAWARTEHIRVHTGEKPYKCKVEGCGLSFRFVSDFSRHRRKTGHYVKSD | 711 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Stsc91342g00004 | 711 | MobiDBLite | consensus disorder prediction | 560 | 596 | - | - | |
| Stsc91342g00004 | 711 | SUPERFAMILY | beta-beta-alpha zinc fingers | 660 | 703 | IPR036236 | - | |
| Stsc91342g00004 | 711 | Gene3D | Classic Zinc Finger | 620 | 675 | - | - | |
| Stsc91342g00004 | 711 | Gene3D | Classic Zinc Finger | 569 | 619 | - | - | |
| Stsc91342g00004 | 711 | MobiDBLite | consensus disorder prediction | 555 | 596 | - | - | |
| Stsc91342g00004 | 711 | PANTHER | ZINC FINGER PROTEIN ZIC AND GLI | 347 | 703 | - | - | |
| Stsc91342g00004 | 711 | SUPERFAMILY | beta-beta-alpha zinc fingers | 621 | 657 | IPR036236 | - | |
| Stsc91342g00004 | 711 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 620 | 649 | IPR013087 | - | |
| Stsc91342g00004 | 711 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 650 | 679 | IPR013087 | - | |
| Stsc91342g00004 | 711 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 682 | 706 | IPR013087 | - | |
| Stsc91342g00004 | 711 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 652 | 674 | IPR013087 | - | |
| Stsc91342g00004 | 711 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 680 | 711 | IPR013087 | - | |
| Stsc91342g00004 | 711 | SMART | c2h2final6 | 680 | 706 | IPR013087 | - | |
| Stsc91342g00004 | 711 | SMART | c2h2final6 | 650 | 674 | IPR013087 | - | |
| Stsc91342g00004 | 711 | SMART | c2h2final6 | 620 | 644 | IPR013087 | - | |
| Stsc91342g00004 | 711 | SMART | c2h2final6 | 597 | 619 | IPR013087 | - | |
| Stsc91342g00004 | 711 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 622 | 644 | IPR013087 | - | |
| Stsc91342g00004 | 711 | Gene3D | Classic Zinc Finger | 676 | 706 | - | - | |
| Stsc91342g00004 | 711 | FunFam | Probable lysine-specific demethylase ELF6 | 647 | 676 | - | - | |
| Stsc91342g00004 | 711 | MobiDBLite | consensus disorder prediction | 490 | 524 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Stsc91342g00004 | Stsc-Chr91342 | 24581 | 27667 | Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Stsc91342g00004 | 512 | 708 | C2H2 Transcription Factor Family | AT5G04240 | 53.234 | 4.47e-63 | 226 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | C2H2 | Stsc91342g00004 | None | None | None |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Stsc91342g00004 | - | - | adu:107467970 | 1146.34 |